Analysis of interatomic Contacts of Structural Units in PDB entry:
3SZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3SZD entry

There are 2 chains in PDB entry 3SZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 7GLY 398
A
 GLY 6LEU 397
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 3SZD. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
315 318Right-handed 310
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There are 6 sheets in PDB entry 3SZD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 19 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 28first strand
Strand 2
B
36 49anti-parallel
Strand 3
B
58 70anti-parallel
Strand 4
B
94 106anti-parallel
Strand 5
B
109 116anti-parallel
Strand 6
B
134 142anti-parallel
Strand 7
B
148 159anti-parallel
Strand 8
B
182 191anti-parallel
Strand 9
B
196 205anti-parallel
Strand 10
B
209 222anti-parallel
Strand 11
B
225 238anti-parallel
Strand 12
B
248 260anti-parallel
Strand 13
B
263 273anti-parallel
Strand 14
B
304 313anti-parallel
Strand 15
B
322 336anti-parallel
Strand 16
B
340 355anti-parallel
Strand 17
B
365 375anti-parallel
Strand 18
B
383 395anti-parallel
Strand 19
B
14 28anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
123 124anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
178 179anti-parallel
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There are 19 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 28first strand
Strand 2
A
36 49anti-parallel
Strand 3
A
57 70anti-parallel
Strand 4
A
94 106anti-parallel
Strand 5
A
109 116anti-parallel
Strand 6
A
134 145anti-parallel
Strand 7
A
148 159anti-parallel
Strand 8
A
182 191anti-parallel
Strand 9
A
196 205anti-parallel
Strand 10
A
209 222anti-parallel
Strand 11
A
225 238anti-parallel
Strand 12
A
248 260anti-parallel
Strand 13
A
263 273anti-parallel
Strand 14
A
304 313anti-parallel
Strand 15
A
322 336anti-parallel
Strand 16
A
340 355anti-parallel
Strand 17
A
365 375anti-parallel
Strand 18
A
383 395anti-parallel
Strand 19
A
14 28anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
123 124anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
174 179anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il