Analysis of interatomic Contacts of Structural Units in PDB entry:
3T01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T01 entry

There is 1 chain in PDB entry 3T01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 4ALA 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3T01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 42Right-handed alpha
Helix 2
2
A
45 55Right-handed alpha
Helix 3
3
A
67 78Right-handed alpha
Helix 4
4
A
80 85Right-handed alpha
Helix 5
5
A
104 108Right-handed 310
Helix 6
6
A
112 120Right-handed alpha
Helix 7
7
A
130 132Right-handed 310
Helix 8
8
A
133 138Right-handed alpha
Helix 9
9
A
155 159Right-handed 310
Helix 10
10
A
160 165Right-handed alpha
Helix 11
11
A
168 174Right-handed alpha
Helix 12
12
A
183 200Right-handed alpha
Helix 13
13
A
211 217Right-handed alpha
Helix 14
14
A
221 241Right-handed alpha
Helix 15
15
A
268 276Right-handed alpha
Helix 16
16
A
311 321Right-handed alpha
Helix 17
17
A
331 339Right-handed alpha
Helix 18
18
A
341 345Right-handed 310
Helix 19
19
A
379 382Right-handed 310
Helix 20
20
A
403 405Right-handed 310
Helix 21
21
A
406 416Right-handed alpha
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There are 6 sheets in PDB entry 3T01. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
14 17anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
384 389anti-parallel
Strand 3
A
244 248anti-parallel
Strand 4
A
23 27parallel
Strand 5
A
204 208parallel
Strand 6
A
124 128parallel
Strand 7
A
148 152parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
98 101anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
375 376anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
357 359parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 284first strand
Strand 2
A
301 305anti-parallel
Strand 3
A
348 352anti-parallel
Strand 4
A
325 330anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il