Analysis of interatomic Contacts of Structural Units in PDB entry:
3T0C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T0C entry

There is 1 chain in PDB entry 3T0C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LEU 743
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 3T0C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 27Right-handed alpha
Helix 2
2
A
31 53Right-handed alpha
Helix 3
3
A
67 77Right-handed alpha
Helix 4
4
A
80 84Right-handed 310
Helix 5
5
A
89 99Right-handed alpha
Helix 6
6
A
133 147Right-handed alpha
Helix 7
7
A
156 163Right-handed alpha
Helix 8
8
A
169 191Right-handed alpha
Helix 9
9
A
201 205Right-handed 310
Helix 10
10
A
206 210Right-handed 310
Helix 11
11
A
211 226Right-handed alpha
Helix 12
12
A
242 247Right-handed alpha
Helix 13
13
A
261 271Right-handed alpha
Helix 14
14
A
293 307Right-handed alpha
Helix 15
15
A
318 322Right-handed 310
Helix 16
16
A
333 338Right-handed alpha
Helix 17
17
A
342 358Right-handed alpha
Helix 18
18
A
362 377Right-handed alpha
Helix 19
19
A
378 382Right-handed 310
Helix 20
20
A
387 391Right-handed 310
Helix 21
21
A
398 411Right-handed alpha
Helix 22
22
A
442 465Right-handed alpha
Helix 23
23
A
480 485Right-handed alpha
Helix 24
24
A
522 531Right-handed alpha
Helix 25
25
A
543 551Right-handed alpha
Helix 26
26
A
558 580Right-handed alpha
Helix 27
27
A
591 596Right-handed alpha
Helix 28
28
A
599 601Right-handed 310
Helix 29
29
A
602 619Right-handed alpha
Helix 30
30
A
639 647Right-handed alpha
Helix 31
31
A
656 659Right-handed 310
Helix 32
32
A
660 662Right-handed 310
Helix 33
33
A
663 669Right-handed alpha
Helix 34
34
A
689 699Right-handed alpha
Helix 35
35
A
700 702Right-handed 310
Helix 36
36
A
705 707Right-handed 310
Helix 37
37
A
721 730Right-handed alpha
Helix 38
38
A
732 742Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 3T0C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
310 315parallel
Strand 3
A
278 284parallel
Strand 4
A
253 257parallel
Strand 5
A
230 234parallel
Strand 6
A
195 199parallel
Strand 7
A
150 155parallel
Strand 8
A
58 60parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
117 119anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 491first strand
Strand 2
A
510 517anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 501first strand
Strand 2
A
504 506anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 542first strand
Strand 2
A
584 589parallel
Strand 3
A
626 631parallel
Strand 4
A
650 654parallel
Strand 5
A
674 678parallel
Strand 6
A
709 712parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il