Analysis of interatomic Contacts of Structural Units in PDB entry:
3T0E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T0E entry

There are 5 chains in PDB entry 3T0E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4ASP 181
B
 PHE 1ARG 218
C
 ALA 1PHE 196
D
 VAL 1CYS 245
E
 LYS 1ALA 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3T0E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 49Right-handed 310
Helix 2
2
A
56 77Right-handed alpha
Helix 3
3
B
83 91Right-handed alpha
Helix 4
4
B
93 101Right-handed alpha
Helix 5
5
B
102 107Right-handed alpha
Helix 6
6
B
107 116Right-handed alpha
Helix 7
7
C
78 82Right-handed 310
Helix 8
8
D
61 63Right-handed 310
Helix 9
9
D
83 87Right-handed 310
Helix 10
10
D
116 120Right-handed 310
Helix 11
11
D
131 139Right-handed alpha
Helix 12
12
D
199 202Right-handed 310
Helix 13
13
E
51 53Right-handed 310
Helix 14
14
E
58 63Right-handed 310
Helix 15
15
E
75 79Right-handed 310
Helix 16
16
E
150 154Right-handed 310
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There are 24 sheets in PDB entry 3T0E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
19 26anti-parallel
Strand 3
A
7 15anti-parallel
Strand 4
B
36 42anti-parallel
Strand 5
B
56 61anti-parallel
Strand 6
B
65 70anti-parallel
Strand 7
B
76 78anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
103 112anti-parallel
Strand 3
A
145 153anti-parallel
Strand 4
A
133 139anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
161 166anti-parallel
Strand 4
A
174 178anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 46first strand
Strand 2
B
53 54anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
144 149anti-parallel
Strand 3
B
184 190anti-parallel
Strand 4
B
171 173anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
144 149anti-parallel
Strand 3
B
184 190anti-parallel
Strand 4
B
177 178anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
157 162anti-parallel
Strand 3
B
200 205anti-parallel
Strand 4
B
213 217anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 12first strand
Strand 2
C
103 108parallel
Strand 3
C
83 90anti-parallel
Strand 4
C
31 37anti-parallel
Strand 5
C
43 49anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 22first strand
Strand 2
C
69 74anti-parallel
Strand 3
C
59 63anti-parallel
Strand 4
C
53 56anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 119first strand
Strand 2
C
133 135anti-parallel
Strand 3
C
166 175anti-parallel
Strand 4
C
151 153anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 119first strand
Strand 2
C
133 135anti-parallel
Strand 3
C
166 175anti-parallel
Strand 4
C
157 161anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 123first strand
Strand 2
D
124 129anti-parallel
Strand 3
D
144 150anti-parallel
Strand 4
D
188 197anti-parallel
Strand 5
D
170 172anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
140 142first strand
Strand 2
D
188 197anti-parallel
Strand 3
D
177 178anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 5first strand
Strand 2
D
17 23anti-parallel
Strand 3
D
75 79anti-parallel
Strand 4
D
65 67anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 9first strand
Strand 2
D
109 111parallel
Strand 3
D
88 95anti-parallel
Strand 4
D
30 36anti-parallel
Strand 5
D
43 49anti-parallel
Strand 6
D
55 56anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 9first strand
Strand 2
D
109 111parallel
Strand 3
D
88 95anti-parallel
Strand 4
D
103 104anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
164 165first strand
Strand 2
D
155 161anti-parallel
Strand 3
D
207 214anti-parallel
Strand 4
D
233 240anti-parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
92 101parallel
Strand 3
E
80 86anti-parallel
Strand 4
E
26 30anti-parallel
Strand 5
E
34 40anti-parallel
Strand 6
E
43 46anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 7first strand
Strand 2
E
92 101parallel
Strand 3
E
114 119anti-parallel
Strand 4
E
143 146anti-parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 14first strand
Strand 2
E
69 71anti-parallel
Strand 3
E
55 56anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
137 138first strand
Strand 2
E
130 131anti-parallel
Strand 3
E
157 163anti-parallel
Strand 4
E
166 172anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
185 188first strand
Strand 2
E
288 293parallel
Strand 3
E
303 305anti-parallel
Strand 4
E
332 333anti-parallel
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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
228 229first strand
Strand 2
E
210 214anti-parallel
Strand 3
E
271 275anti-parallel
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There are 3 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
326 328first strand
Strand 2
E
315 317anti-parallel
Strand 3
E
345 346anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il