Analysis of interatomic Contacts of Structural Units in PDB entry:
3T0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T0J entry

There are 4 chains in PDB entry 3T0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 272
B
 SER 0LEU 265
C
 SER 0LYS 271
D
 MET 1LEU 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3T0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 26Right-handed alpha
Helix 2
2
A
35 57Right-handed alpha
Helix 3
3
A
87 95Right-handed alpha
Helix 4
4
A
155 161Right-handed 310
Helix 5
5
A
163 175Right-handed alpha
Helix 6
6
A
183 193Right-handed alpha
Helix 7
7
A
205 219Right-handed alpha
Helix 8
8
A
243 254Right-handed alpha
Helix 9
9
A
255 257Right-handed 310
Helix 10
10
A
258 271Right-handed alpha
Helix 11
11
B
1 24Right-handed alpha
Helix 12
12
B
33 57Right-handed alpha
Helix 13
13
B
87 95Right-handed alpha
Helix 14
14
B
146 149Right-handed 310
Helix 15
15
B
155 161Right-handed 310
Helix 16
16
B
163 175Right-handed alpha
Helix 17
17
B
183 193Right-handed alpha
Helix 18
18
B
205 219Right-handed alpha
Helix 19
19
B
243 254Right-handed alpha
Helix 20
20
B
255 259Right-handed 310
Helix 21
21
C
1 26Right-handed alpha
Helix 22
22
C
35 57Right-handed alpha
Helix 23
23
C
87 94Right-handed alpha
Helix 24
24
C
146 149Right-handed 310
Helix 25
25
C
155 161Right-handed 310
Helix 26
26
C
163 175Right-handed alpha
Helix 27
27
C
183 193Right-handed alpha
Helix 28
28
C
205 219Right-handed alpha
Helix 29
29
C
246 254Right-handed alpha
Helix 30
30
C
255 257Right-handed 310
Helix 31
31
C
258 270Right-handed alpha
Helix 32
32
D
1 22Right-handed alpha
Helix 33
33
D
35 57Right-handed alpha
Helix 34
34
D
87 95Right-handed alpha
Helix 35
35
D
146 149Right-handed 310
Helix 36
36
D
155 159Right-handed 310
Helix 37
37
D
164 175Right-handed alpha
Helix 38
38
D
183 193Right-handed alpha
Helix 39
39
D
205 219Right-handed alpha
Helix 40
40
D
243 254Right-handed alpha
Helix 41
41
D
255 257Right-handed 310
Helix 42
42
D
258 264Right-handed alpha
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There are 8 sheets in PDB entry 3T0J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
78 86parallel
Strand 3
A
99 106anti-parallel
Strand 4
A
109 117anti-parallel
Strand 5
A
122 127anti-parallel
Strand 6
A
132 134anti-parallel
Strand 7
A
137 138anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
151 153parallel
Strand 3
A
198 204parallel
Strand 4
A
237 242anti-parallel
Strand 5
A
222 224anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 64first strand
Strand 2
B
78 86parallel
Strand 3
B
99 106anti-parallel
Strand 4
B
109 117anti-parallel
Strand 5
B
122 127anti-parallel
Strand 6
B
132 134anti-parallel
Strand 7
B
137 138anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 179first strand
Strand 2
B
151 153parallel
Strand 3
B
198 204parallel
Strand 4
B
237 242anti-parallel
Strand 5
B
222 224anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 64first strand
Strand 2
C
78 86parallel
Strand 3
C
99 106anti-parallel
Strand 4
C
109 117anti-parallel
Strand 5
C
122 127anti-parallel
Strand 6
C
132 134anti-parallel
Strand 7
C
137 138anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 179first strand
Strand 2
C
151 153parallel
Strand 3
C
198 204parallel
Strand 4
C
237 242anti-parallel
Strand 5
C
222 224anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 64first strand
Strand 2
D
78 86parallel
Strand 3
D
99 106anti-parallel
Strand 4
D
109 117anti-parallel
Strand 5
D
122 127anti-parallel
Strand 6
D
132 134anti-parallel
Strand 7
D
137 138anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
177 179first strand
Strand 2
D
151 153parallel
Strand 3
D
198 204parallel
Strand 4
D
237 241anti-parallel
Strand 5
D
223 224anti-parallel
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