Analysis of interatomic Contacts of Structural Units in PDB entry:
3T0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T0P entry

There are 2 chains in PDB entry 3T0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0PHE 365
B
 GLY 0THR 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 3T0P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 18Right-handed alpha
Helix 2
2
A
19 21Right-handed 310
Helix 3
3
A
27 30Right-handed 310
Helix 4
4
A
71 81Right-handed alpha
Helix 5
5
A
111 115Right-handed 310
Helix 6
6
A
131 140Right-handed alpha
Helix 7
7
A
141 145Right-handed 310
Helix 8
8
A
152 154Right-handed 310
Helix 9
9
A
196 206Right-handed alpha
Helix 10
10
A
244 248Right-handed 310
Helix 11
11
A
260 272Right-handed alpha
Helix 12
12
A
320 329Right-handed alpha
Helix 13
13
B
7 18Right-handed alpha
Helix 14
14
B
19 21Right-handed 310
Helix 15
15
B
28 30Right-handed 310
Helix 16
16
B
71 81Right-handed alpha
Helix 17
17
B
111 115Right-handed 310
Helix 18
18
B
131 140Right-handed alpha
Helix 19
19
B
141 145Right-handed 310
Helix 20
20
B
152 154Right-handed 310
Helix 21
21
B
196 206Right-handed alpha
Helix 22
22
B
244 248Right-handed 310
Helix 23
23
B
260 272Right-handed alpha
Helix 24
24
B
320 329Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3T0P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
85 90anti-parallel
Strand 4
A
95 100anti-parallel
Strand 5
A
103 108anti-parallel
Strand 6
B
301 307anti-parallel
Strand 7
B
290 296anti-parallel
Strand 8
B
282 287anti-parallel
Strand 9
B
315 319anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 70first strand
Strand 2
A
32 37anti-parallel
Strand 3
A
42 47anti-parallel
Strand 4
A
51 57anti-parallel
Strand 5
A
230 235anti-parallel
Strand 6
A
222 227anti-parallel
Strand 7
A
213 219anti-parallel
Strand 8
A
126 130anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 312first strand
Strand 2
A
254 259anti-parallel
Strand 3
A
335 340anti-parallel
Strand 4
A
347 350anti-parallel
Strand 5
A
356 360anti-parallel
Strand 6
A
175 195anti-parallel
Strand 7
A
156 171anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 319first strand
Strand 2
A
282 287anti-parallel
Strand 3
A
290 296anti-parallel
Strand 4
A
300 307anti-parallel
Strand 5
B
103 108anti-parallel
Strand 6
B
95 100anti-parallel
Strand 7
B
85 90anti-parallel
Strand 8
B
2 6anti-parallel
Strand 9
B
60 63anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 70first strand
Strand 2
B
32 37anti-parallel
Strand 3
B
42 47anti-parallel
Strand 4
B
51 57anti-parallel
Strand 5
B
230 235anti-parallel
Strand 6
B
222 227anti-parallel
Strand 7
B
213 219anti-parallel
Strand 8
B
126 130anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 312first strand
Strand 2
B
254 259anti-parallel
Strand 3
B
335 340anti-parallel
Strand 4
B
347 350anti-parallel
Strand 5
B
356 360anti-parallel
Strand 6
B
175 195anti-parallel
Strand 7
B
156 171anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il