Analysis of interatomic Contacts of Structural Units in PDB entry:
3T0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T0Q entry

There is 1 chain in PDB entry 3T0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 365SER 703
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3T0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
426 440Right-handed alpha
Helix 2
2
A
441 443Right-handed 310
Helix 3
3
A
458 465Right-handed alpha
Helix 4
4
A
469 486Right-handed alpha
Helix 5
5
A
551 562Right-handed alpha
Helix 6
6
A
576 580Right-handed 310
Helix 7
7
A
621 646Right-handed alpha
Helix 8
8
A
648 652Right-handed 310
Helix 9
9
A
655 658Right-handed 310
Helix 10
10
A
659 666Right-handed alpha
Helix 11
11
A
667 669Right-handed 310
Helix 12
12
A
684 686Right-handed 310
Helix 13
13
A
687 703Right-handed alpha
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There are 4 sheets in PDB entry 3T0Q. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 421first strand
Strand 2
A
366 373parallel
Strand 3
A
674 681parallel
Strand 4
A
446 452parallel
Strand 5
A
598 607parallel
Strand 6
A
581 592anti-parallel
Strand 7
A
490 502anti-parallel
Strand 8
A
505 508anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 421first strand
Strand 2
A
366 373parallel
Strand 3
A
674 681parallel
Strand 4
A
446 452parallel
Strand 5
A
598 607parallel
Strand 6
A
581 592anti-parallel
Strand 7
A
490 502anti-parallel
Strand 8
A
547 548anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 389first strand
Strand 2
A
399 405anti-parallel
Strand 3
A
411 417anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 533first strand
Strand 2
A
538 541anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il