Analysis of interatomic Contacts of Structural Units in PDB entry:
3T0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T0T entry

There are 3 chains in PDB entry 3T0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 583
B
 MET 1ASN 583
C
 MET 1LEU 152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 97 helices in PDB entry 3T0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
16 27Right-handed alpha
Helix 3
3
A
39 57Right-handed alpha
Helix 4
4
A
110 115Right-handed alpha
Helix 5
5
A
171 184Right-handed alpha
Helix 6
6
A
196 211Right-handed alpha
Helix 7
7
A
222 228Right-handed alpha
Helix 8
8
A
228 234Right-handed alpha
Helix 9
9
A
243 250Right-handed alpha
Helix 10
10
A
254 269Right-handed alpha
Helix 11
11
A
280 285Right-handed 310
Helix 12
12
A
290 304Right-handed alpha
Helix 13
13
A
311 316Right-handed alpha
Helix 14
14
A
319 337Right-handed alpha
Helix 15
15
A
339 351Right-handed alpha
Helix 16
16
A
357 371Right-handed alpha
Helix 17
17
A
382 391Right-handed alpha
Helix 18
18
A
404 409Right-handed alpha
Helix 19
19
A
410 413Right-handed 310
Helix 20
20
A
426 441Right-handed alpha
Helix 21
21
A
497 501Right-handed 310
Helix 22
22
A
519 524Right-handed alpha
Helix 23
23
A
538 547Right-handed alpha
Helix 24
24
A
557 562Right-handed alpha
Helix 25
25
B
11 15Right-handed 310
Helix 26
26
B
16 27Right-handed alpha
Helix 27
27
B
39 57Right-handed alpha
Helix 28
28
B
110 114Right-handed 310
Helix 29
29
B
171 184Right-handed alpha
Helix 30
30
B
196 211Right-handed alpha
Helix 31
31
B
222 228Right-handed alpha
Helix 32
32
B
228 234Right-handed alpha
Helix 33
33
B
243 250Right-handed alpha
Helix 34
34
B
254 269Right-handed alpha
Helix 35
35
B
280 285Right-handed 310
Helix 36
36
B
290 304Right-handed alpha
Helix 37
37
B
311 316Right-handed alpha
Helix 38
38
B
319 337Right-handed alpha
Helix 39
39
B
339 351Right-handed alpha
Helix 40
40
B
354 356Right-handed 310
Helix 41
41
B
357 371Right-handed alpha
Helix 42
42
B
382 391Right-handed alpha
Helix 43
43
B
404 409Right-handed alpha
Helix 44
44
B
426 441Right-handed alpha
Helix 45
45
B
497 501Right-handed 310
Helix 46
46
B
519 524Right-handed alpha
Helix 47
47
B
538 547Right-handed alpha
Helix 48
48
B
557 562Right-handed alpha
Helix 49
49
C
11 15Right-handed 310
Helix 50
50
C
16 27Right-handed alpha
Helix 51
51
C
39 57Right-handed alpha
Helix 52
52
C
110 115Right-handed alpha
Helix 53
53
C
171 184Right-handed alpha
Helix 54
54
C
196 211Right-handed alpha
Helix 55
55
C
222 228Right-handed alpha
Helix 56
56
C
228 234Right-handed alpha
Helix 57
57
C
243 250Right-handed alpha
Helix 58
58
C
254 269Right-handed alpha
Helix 59
59
C
280 285Right-handed 310
Helix 60
60
C
290 304Right-handed alpha
Helix 61
61
C
311 316Right-handed alpha
Helix 62
62
C
319 337Right-handed alpha
Helix 63
63
C
339 351Right-handed alpha
Helix 64
64
C
354 356Right-handed 310
Helix 65
65
C
357 371Right-handed alpha
Helix 66
66
C
382 391Right-handed alpha
Helix 67
67
C
404 409Right-handed alpha
Helix 68
68
C
410 413Right-handed 310
Helix 69
69
C
426 441Right-handed alpha
Helix 70
70
C
497 501Right-handed 310
Helix 71
71
C
519 524Right-handed alpha
Helix 72
72
C
538 547Right-handed alpha
Helix 73
73
C
557 562Right-handed alpha
Helix 74
74
D
11 15Right-handed 310
Helix 75
75
D
16 27Right-handed alpha
Helix 76
76
D
39 57Right-handed alpha
Helix 77
77
D
110 115Right-handed alpha
Helix 78
78
D
171 184Right-handed alpha
Helix 79
79
D
196 211Right-handed alpha
Helix 80
80
D
222 228Right-handed alpha
Helix 81
81
D
228 234Right-handed alpha
Helix 82
82
D
243 250Right-handed alpha
Helix 83
83
D
254 269Right-handed alpha
Helix 84
84
D
280 285Right-handed 310
Helix 85
85
D
290 304Right-handed alpha
Helix 86
86
D
311 316Right-handed alpha
Helix 87
87
D
319 337Right-handed alpha
Helix 88
88
D
339 351Right-handed alpha
Helix 89
89
D
357 371Right-handed alpha
Helix 90
90
D
382 391Right-handed alpha
Helix 91
91
D
404 409Right-handed alpha
Helix 92
92
D
410 413Right-handed 310
Helix 93
93
D
426 441Right-handed alpha
Helix 94
94
D
497 501Right-handed 310
Helix 95
95
D
519 524Right-handed alpha
Helix 96
96
D
538 547Right-handed alpha
Helix 97
97
D
557 562Right-handed alpha
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There are 18 sheets in PDB entry 3T0T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 218first strand
Strand 2
A
188 191parallel
Strand 3
A
62 66parallel
Strand 4
A
30 34parallel
Strand 5
A
5 9parallel
Strand 6
A
307 310parallel
Strand 7
A
273 276parallel
Strand 8
A
239 242parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
157 159anti-parallel
Strand 3
A
120 123anti-parallel
Strand 4
A
128 136anti-parallel
Strand 5
A
141 145anti-parallel
Strand 6
A
89 93anti-parallel
Strand 7
A
103 105parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
150 152anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 420first strand
Strand 2
A
396 401parallel
Strand 3
A
374 378parallel
Strand 4
A
449 454parallel
Strand 5
A
466 471anti-parallel
Strand 6
B
466 471anti-parallel
Strand 7
B
449 454anti-parallel
Strand 8
B
374 378parallel
Strand 9
B
396 401parallel
Strand 10
B
416 420parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 478first strand
Strand 2
A
576 578anti-parallel
Strand 3
A
567 571anti-parallel
Strand 4
A
486 493anti-parallel
Strand 5
A
508 512parallel
Strand 6
A
528 531parallel
Strand 7
A
551 553parallel
Strand 8
A
480 482anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 218first strand
Strand 2
B
188 191parallel
Strand 3
B
62 66parallel
Strand 4
B
30 34parallel
Strand 5
B
5 9parallel
Strand 6
B
307 310parallel
Strand 7
B
273 276parallel
Strand 8
B
239 242parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 73first strand
Strand 2
B
157 159anti-parallel
Strand 3
B
120 123anti-parallel
Strand 4
B
128 136anti-parallel
Strand 5
B
141 145anti-parallel
Strand 6
B
89 93anti-parallel
Strand 7
B
103 105parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 84first strand
Strand 2
B
150 152anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
477 478first strand
Strand 2
B
576 578anti-parallel
Strand 3
B
567 571anti-parallel
Strand 4
B
486 493anti-parallel
Strand 5
B
508 512parallel
Strand 6
B
528 531parallel
Strand 7
B
551 553parallel
Strand 8
B
480 482anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
215 218first strand
Strand 2
C
188 191parallel
Strand 3
C
62 66parallel
Strand 4
C
30 34parallel
Strand 5
C
5 9parallel
Strand 6
C
307 310parallel
Strand 7
C
273 276parallel
Strand 8
C
239 242parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 73first strand
Strand 2
C
157 159anti-parallel
Strand 3
C
120 123anti-parallel
Strand 4
C
128 136anti-parallel
Strand 5
C
141 145anti-parallel
Strand 6
C
89 93anti-parallel
Strand 7
C
103 105parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 84first strand
Strand 2
C
150 152anti-parallel
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There are 10 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
416 420first strand
Strand 2
C
396 401parallel
Strand 3
C
374 378parallel
Strand 4
C
449 454parallel
Strand 5
C
466 471anti-parallel
Strand 6
D
466 471anti-parallel
Strand 7
D
449 454anti-parallel
Strand 8
D
374 378parallel
Strand 9
D
396 401parallel
Strand 10
D
416 420parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
477 478first strand
Strand 2
C
576 578anti-parallel
Strand 3
C
567 571anti-parallel
Strand 4
C
486 493anti-parallel
Strand 5
C
508 512parallel
Strand 6
C
528 531parallel
Strand 7
C
551 553parallel
Strand 8
C
480 482anti-parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
215 218first strand
Strand 2
D
188 191parallel
Strand 3
D
62 66parallel
Strand 4
D
30 34parallel
Strand 5
D
5 9parallel
Strand 6
D
307 310parallel
Strand 7
D
273 276parallel
Strand 8
D
239 242parallel
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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
72 73first strand
Strand 2
D
157 159anti-parallel
Strand 3
D
120 123anti-parallel
Strand 4
D
128 136anti-parallel
Strand 5
D
141 145anti-parallel
Strand 6
D
89 93anti-parallel
Strand 7
D
103 105parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
82 84first strand
Strand 2
D
150 152anti-parallel
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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
477 478first strand
Strand 2
D
576 578anti-parallel
Strand 3
D
567 571anti-parallel
Strand 4
D
486 493anti-parallel
Strand 5
D
508 512parallel
Strand 6
D
528 531parallel
Strand 7
D
551 553parallel
Strand 8
D
480 482anti-parallel
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