Analysis of interatomic Contacts of Structural Units in PDB entry:
3T24


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T24 entry

There are 3 chains in PDB entry 3T24 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN -1TRP 394
B
 ILE 3TRP 394
C
 SER 0TRP 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 3T24. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 5Right-handed alpha
Helix 2
2
A
314 316Right-handed 310
Helix 3
3
C
1 5Right-handed alpha
Helix 4
4
C
314 316Right-handed 310
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There are 3 sheets in PDB entry 3T24. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 19 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 23first strand
Strand 2
A
26 43anti-parallel
Strand 3
A
58 66anti-parallel
Strand 4
A
89 101anti-parallel
Strand 5
A
104 111anti-parallel
Strand 6
A
129 137anti-parallel
Strand 7
A
150 161anti-parallel
Strand 8
A
185 195anti-parallel
Strand 9
A
198 207anti-parallel
Strand 10
A
211 225anti-parallel
Strand 11
A
228 248anti-parallel
Strand 12
A
248 260anti-parallel
Strand 13
A
263 273anti-parallel
Strand 14
A
303 312anti-parallel
Strand 15
A
321 334anti-parallel
Strand 16
A
341 354anti-parallel
Strand 17
A
364 374anti-parallel
Strand 18
A
379 392anti-parallel
Strand 19
A
7 23anti-parallel
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There are 19 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 22first strand
Strand 2
B
29 43anti-parallel
Strand 3
B
58 66anti-parallel
Strand 4
B
88 101anti-parallel
Strand 5
B
104 111anti-parallel
Strand 6
B
129 137anti-parallel
Strand 7
B
150 161anti-parallel
Strand 8
B
185 195anti-parallel
Strand 9
B
198 207anti-parallel
Strand 10
B
211 223anti-parallel
Strand 11
B
228 248anti-parallel
Strand 12
B
248 260anti-parallel
Strand 13
B
263 273anti-parallel
Strand 14
B
303 312anti-parallel
Strand 15
B
321 333anti-parallel
Strand 16
B
342 354anti-parallel
Strand 17
B
364 374anti-parallel
Strand 18
B
379 392anti-parallel
Strand 19
B
7 22anti-parallel
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There are 20 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 27first strand
Strand 2
C
7 23anti-parallel
Strand 3
C
379 392anti-parallel
Strand 4
C
364 374anti-parallel
Strand 5
C
341 354anti-parallel
Strand 6
C
321 334anti-parallel
Strand 7
C
303 312anti-parallel
Strand 8
C
263 273anti-parallel
Strand 9
C
248 260anti-parallel
Strand 10
C
228 248anti-parallel
Strand 11
C
211 225anti-parallel
Strand 12
C
198 207anti-parallel
Strand 13
C
185 193anti-parallel
Strand 14
C
150 161anti-parallel
Strand 15
C
129 137anti-parallel
Strand 16
C
104 111anti-parallel
Strand 17
C
91 101anti-parallel
Strand 18
C
58 61anti-parallel
Strand 19
C
32 43anti-parallel
Strand 20
C
7 23anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il