Analysis of interatomic Contacts of Structural Units in PDB entry:
3T34


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T34 entry

There are 2 chains in PDB entry 3T34 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2VAL 606
B
 MET 1VAL 606
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3T34. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 11Right-handed alpha
Helix 2
2
A
46 56Right-handed alpha
Helix 3
3
A
99 114Right-handed alpha
Helix 4
4
A
157 172Right-handed alpha
Helix 5
5
A
186 189Right-handed 310
Helix 6
6
A
190 199Right-handed alpha
Helix 7
7
A
212 216Right-handed 310
Helix 8
8
A
222 227Right-handed alpha
Helix 9
9
A
244 250Right-handed alpha
Helix 10
10
A
253 266Right-handed alpha
Helix 11
11
A
271 278Right-handed 310
Helix 12
12
A
279 297Right-handed alpha
Helix 13
13
A
301 311Right-handed alpha
Helix 14
14
A
587 599Right-handed alpha
Helix 15
15
B
2 10Right-handed alpha
Helix 16
16
B
30 34Right-handed 310
Helix 17
17
B
46 56Right-handed alpha
Helix 18
18
B
99 116Right-handed alpha
Helix 19
19
B
157 172Right-handed alpha
Helix 20
20
B
186 189Right-handed 310
Helix 21
21
B
190 200Right-handed alpha
Helix 22
22
B
212 216Right-handed 310
Helix 23
23
B
222 227Right-handed alpha
Helix 24
24
B
244 250Right-handed alpha
Helix 25
25
B
253 268Right-handed alpha
Helix 26
26
B
274 278Right-handed 310
Helix 27
27
B
279 296Right-handed alpha
Helix 28
28
B
297 299Right-handed 310
Helix 29
29
B
306 311Right-handed alpha
Helix 30
30
B
582 585Right-handed 310
Helix 31
31
B
586 599Right-handed alpha
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There are 3 sheets in PDB entry 3T34. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
126 132anti-parallel
Strand 3
A
72 78parallel
Strand 4
A
138 142anti-parallel
Strand 5
A
36 40parallel
Strand 6
A
175 182parallel
Strand 7
A
206 211parallel
Strand 8
A
238 239parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 75first strand
Strand 2
B
139 142anti-parallel
Strand 3
B
36 40parallel
Strand 4
B
175 182parallel
Strand 5
B
206 211parallel
Strand 6
B
238 239parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 89first strand
Strand 2
B
128 131anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il