Analysis of interatomic Contacts of Structural Units in PDB entry:
3T38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T38 entry

There are 2 chains in PDB entry 3T38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 9GLN 212
B
 LEU 9GLN 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3T38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 25Right-handed alpha
Helix 2
2
A
30 50Right-handed alpha
Helix 3
3
A
54 74Right-handed alpha
Helix 4
4
A
93 107Right-handed alpha
Helix 5
5
A
108 110Right-handed 310
Helix 6
6
A
124 134Right-handed alpha
Helix 7
7
A
147 154Right-handed alpha
Helix 8
8
A
189 212Right-handed alpha
Helix 9
9
B
10 25Right-handed alpha
Helix 10
10
B
30 50Right-handed alpha
Helix 11
11
B
54 74Right-handed alpha
Helix 12
12
B
93 107Right-handed alpha
Helix 13
13
B
108 110Right-handed 310
Helix 14
14
B
126 131Right-handed alpha
Helix 15
15
B
132 135Right-handed 310
Helix 16
16
B
147 154Right-handed alpha
Helix 17
17
B
193 212Right-handed alpha
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There are 2 sheets in PDB entry 3T38. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 116first strand
Strand 2
A
83 88parallel
Strand 3
A
156 159parallel
Strand 4
A
173 176parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 116first strand
Strand 2
B
83 88parallel
Strand 3
B
156 159parallel
Strand 4
B
173 176parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il