Analysis of interatomic Contacts of Structural Units in PDB entry:
3T5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T5B entry

There is 1 chain in PDB entry 3T5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3T5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 15Right-handed alpha
Helix 2
2
A
24 27Right-handed 310
Helix 3
3
A
32 49Right-handed alpha
Helix 4
4
A
64 78Right-handed alpha
Helix 5
5
A
89 101Right-handed alpha
Helix 6
6
A
111 121Right-handed alpha
Helix 7
7
A
133 143Right-handed alpha
Helix 8
8
A
178 192Right-handed alpha
Helix 9
9
A
208 222Right-handed alpha
Helix 10
10
A
235 243Right-handed alpha
Helix 11
11
A
251 259Right-handed alpha
Helix 12
12
A
261 267Right-handed 310
Helix 13
13
A
283 292Right-handed alpha
Helix 14
14
A
304 307Right-handed 310
Helix 15
15
A
314 318Right-handed 310
Helix 16
16
A
365 372Right-handed alpha
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There are 5 sheets in PDB entry 3T5B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
19 23anti-parallel
Strand 3
A
224 227parallel
Strand 4
A
199 202parallel
Strand 5
A
247 250parallel
Strand 6
A
274 277parallel
Strand 7
A
296 302parallel
Strand 8
A
310 313anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
56 60parallel
Strand 3
A
104 107parallel
Strand 4
A
130 132parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 163first strand
Strand 2
A
173 177anti-parallel
Strand 3
A
361 362anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
332 337anti-parallel
Strand 3
A
347 355anti-parallel
Strand 4
A
377 386anti-parallel
Strand 5
A
373 374anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
332 337anti-parallel
Strand 3
A
347 355anti-parallel
Strand 4
A
377 386anti-parallel
Strand 5
A
392 394anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il