Analysis of interatomic Contacts of Structural Units in PDB entry:
3T5P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3T5P entry

There are 5 chains in PDB entry 3T5P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	VAL 300
B	THR 2	VAL 300
C	ALA 0	VAL 300
D	LYS 3	VAL 299
E	LYS 3	LEU 160

There are 96 helices in PDB entry 3T5P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	21	37	Right-handed alpha
Helix 2	2	A	49	59	Right-handed alpha
Helix 3	3	A	70	82	Right-handed alpha
Helix 4	4	A	99	105	Right-handed alpha
Helix 5	5	A	110	119	Right-handed alpha
Helix 6	6	A	161	170	Right-handed alpha
Helix 7	7	A	231	242	Right-handed alpha
Helix 8	8	B	21	37	Right-handed alpha
Helix 9	9	B	49	59	Right-handed alpha
Helix 10	10	B	70	82	Right-handed alpha
Helix 11	11	B	99	105	Right-handed alpha
Helix 12	12	B	110	119	Right-handed alpha
Helix 13	13	B	146	150	Right-handed 310
Helix 14	14	B	153	161	Right-handed alpha
Helix 15	15	B	161	170	Right-handed alpha
Helix 16	16	B	231	242	Right-handed alpha
Helix 17	17	C	21	37	Right-handed alpha
Helix 18	18	C	49	59	Right-handed alpha
Helix 19	19	C	70	82	Right-handed alpha
Helix 20	20	C	99	105	Right-handed alpha
Helix 21	21	C	110	120	Right-handed alpha
Helix 22	22	C	155	161	Right-handed alpha
Helix 23	23	C	161	170	Right-handed alpha
Helix 24	24	C	171	173	Right-handed 310
Helix 25	25	C	231	242	Right-handed alpha
Helix 26	26	C	247	251	Right-handed 310
Helix 27	27	D	21	37	Right-handed alpha
Helix 28	28	D	49	59	Right-handed alpha
Helix 29	29	D	70	82	Right-handed alpha
Helix 30	30	D	99	105	Right-handed alpha
Helix 31	31	D	110	120	Right-handed alpha
Helix 32	32	D	150	161	Right-handed alpha
Helix 33	33	D	161	170	Right-handed alpha
Helix 34	34	D	231	242	Right-handed alpha
Helix 35	35	E	21	37	Right-handed alpha
Helix 36	36	E	49	59	Right-handed alpha
Helix 37	37	E	70	82	Right-handed alpha
Helix 38	38	E	99	105	Right-handed alpha
Helix 39	39	E	110	119	Right-handed alpha
Helix 40	40	E	150	161	Right-handed alpha
Helix 41	41	E	161	169	Right-handed alpha
Helix 42	42	E	231	242	Right-handed alpha
Helix 43	43	F	21	37	Right-handed alpha
Helix 44	44	F	49	59	Right-handed alpha
Helix 45	45	F	70	82	Right-handed alpha
Helix 46	46	F	99	105	Right-handed alpha
Helix 47	47	F	110	121	Right-handed alpha
Helix 48	48	F	161	170	Right-handed alpha
Helix 49	49	F	231	241	Right-handed alpha
Helix 50	50	G	21	37	Right-handed alpha
Helix 51	51	G	49	59	Right-handed alpha
Helix 52	52	G	70	82	Right-handed alpha
Helix 53	53	G	99	105	Right-handed alpha
Helix 54	54	G	110	121	Right-handed alpha
Helix 55	55	G	156	161	Right-handed alpha
Helix 56	56	G	161	170	Right-handed alpha
Helix 57	57	G	171	173	Right-handed 310
Helix 58	58	G	231	242	Right-handed alpha
Helix 59	59	H	21	37	Right-handed alpha
Helix 60	60	H	49	59	Right-handed alpha
Helix 61	61	H	70	82	Right-handed alpha
Helix 62	62	H	99	105	Right-handed alpha
Helix 63	63	H	110	121	Right-handed alpha
Helix 64	64	H	161	170	Right-handed alpha
Helix 65	65	H	231	242	Right-handed alpha
Helix 66	66	I	21	37	Right-handed alpha
Helix 67	67	I	49	59	Right-handed alpha
Helix 68	68	I	70	82	Right-handed alpha
Helix 69	69	I	99	105	Right-handed alpha
Helix 70	70	I	110	119	Right-handed alpha
Helix 71	71	I	154	161	Right-handed alpha
Helix 72	72	I	161	170	Right-handed alpha
Helix 73	73	I	231	240	Right-handed alpha
Helix 74	74	J	21	37	Right-handed alpha
Helix 75	75	J	49	59	Right-handed alpha
Helix 76	76	J	70	82	Right-handed alpha
Helix 77	77	J	99	105	Right-handed alpha
Helix 78	78	J	110	120	Right-handed alpha
Helix 79	79	J	161	170	Right-handed alpha
Helix 80	80	J	231	242	Right-handed alpha
Helix 81	81	K	21	37	Right-handed alpha
Helix 82	82	K	49	59	Right-handed alpha
Helix 83	83	K	70	82	Right-handed alpha
Helix 84	84	K	99	105	Right-handed alpha
Helix 85	85	K	110	119	Right-handed alpha
Helix 86	86	K	153	161	Right-handed alpha
Helix 87	87	K	161	170	Right-handed alpha
Helix 88	88	K	231	242	Right-handed alpha
Helix 89	89	L	21	37	Right-handed alpha
Helix 90	90	L	49	59	Right-handed alpha
Helix 91	91	L	70	82	Right-handed alpha
Helix 92	92	L	99	105	Right-handed alpha
Helix 93	93	L	110	119	Right-handed alpha
Helix 94	94	L	153	161	Right-handed alpha
Helix 95	95	L	161	170	Right-handed alpha
Helix 96	96	L	231	242	Right-handed alpha

There are 42 sheets in PDB entry 3T5P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	94	first strand
Strand 2	A	64	69	parallel
Strand 3	A	9	13	parallel
Strand 4	A	39	44	parallel
Strand 5	H	39	44	anti-parallel
Strand 6	H	9	13	parallel
Strand 7	H	64	69	parallel
Strand 8	H	89	94	parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	136	first strand
Strand 2	A	123	131	anti-parallel
Strand 3	A	282	294	anti-parallel
Strand 4	A	259	264	anti-parallel
Strand 5	A	179	185	anti-parallel
Strand 6	A	188	200	anti-parallel
Strand 7	A	139	142	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	136	first strand
Strand 2	A	123	131	anti-parallel
Strand 3	A	282	294	anti-parallel
Strand 4	A	259	264	anti-parallel
Strand 5	A	179	185	anti-parallel
Strand 6	A	188	200	anti-parallel
Strand 7	A	222	228	anti-parallel
Strand 8	A	252	257	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	208	209	anti-parallel

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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	94	first strand
Strand 2	B	64	69	parallel
Strand 3	B	9	13	parallel
Strand 4	B	39	44	parallel
Strand 5	G	39	44	anti-parallel
Strand 6	G	9	13	parallel
Strand 7	G	64	69	parallel
Strand 8	G	89	94	parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	136	first strand
Strand 2	B	123	131	anti-parallel
Strand 3	B	282	294	anti-parallel
Strand 4	B	259	264	anti-parallel
Strand 5	B	179	185	anti-parallel
Strand 6	B	188	200	anti-parallel
Strand 7	B	222	228	anti-parallel
Strand 8	B	252	257	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	136	first strand
Strand 2	B	123	131	anti-parallel
Strand 3	B	282	294	anti-parallel
Strand 4	B	259	264	anti-parallel
Strand 5	B	179	185	anti-parallel
Strand 6	B	188	200	anti-parallel
Strand 7	B	139	142	anti-parallel
Strand 8	B	271	272	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	208	209	anti-parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	94	first strand
Strand 2	C	64	69	parallel
Strand 3	C	9	13	parallel
Strand 4	C	39	44	parallel
Strand 5	E	39	44	anti-parallel
Strand 6	E	9	13	parallel
Strand 7	E	64	69	parallel
Strand 8	E	89	94	parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	136	first strand
Strand 2	C	123	131	anti-parallel
Strand 3	C	282	294	anti-parallel
Strand 4	C	259	264	anti-parallel
Strand 5	C	179	185	anti-parallel
Strand 6	C	188	200	anti-parallel
Strand 7	C	139	142	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	136	first strand
Strand 2	C	123	131	anti-parallel
Strand 3	C	282	294	anti-parallel
Strand 4	C	259	264	anti-parallel
Strand 5	C	179	185	anti-parallel
Strand 6	C	188	200	anti-parallel
Strand 7	C	222	228	anti-parallel
Strand 8	C	253	257	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	205	first strand
Strand 2	C	208	209	anti-parallel

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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	94	first strand
Strand 2	D	64	69	parallel
Strand 3	D	9	13	parallel
Strand 4	D	39	44	parallel
Strand 5	L	39	44	anti-parallel
Strand 6	L	9	13	parallel
Strand 7	L	64	69	parallel
Strand 8	L	89	94	parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	136	first strand
Strand 2	D	123	131	anti-parallel
Strand 3	D	282	294	anti-parallel
Strand 4	D	259	264	anti-parallel
Strand 5	D	179	185	anti-parallel
Strand 6	D	188	200	anti-parallel
Strand 7	D	139	142	anti-parallel

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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	136	first strand
Strand 2	D	123	131	anti-parallel
Strand 3	D	282	294	anti-parallel
Strand 4	D	259	264	anti-parallel
Strand 5	D	179	185	anti-parallel
Strand 6	D	188	200	anti-parallel
Strand 7	D	222	228	anti-parallel
Strand 8	D	253	257	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	205	first strand
Strand 2	D	208	209	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	136	first strand
Strand 2	E	123	131	anti-parallel
Strand 3	E	282	294	anti-parallel
Strand 4	E	259	264	anti-parallel
Strand 5	E	179	185	anti-parallel
Strand 6	E	188	200	anti-parallel
Strand 7	E	139	142	anti-parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	136	first strand
Strand 2	E	123	131	anti-parallel
Strand 3	E	282	294	anti-parallel
Strand 4	E	259	264	anti-parallel
Strand 5	E	179	185	anti-parallel
Strand 6	E	188	200	anti-parallel
Strand 7	E	222	228	anti-parallel
Strand 8	E	252	257	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	205	first strand
Strand 2	E	208	209	anti-parallel

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There are 8 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	94	first strand
Strand 2	F	64	69	parallel
Strand 3	F	9	13	parallel
Strand 4	F	39	44	parallel
Strand 5	J	39	44	anti-parallel
Strand 6	J	9	13	parallel
Strand 7	J	64	69	parallel
Strand 8	J	89	94	parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	136	first strand
Strand 2	F	123	131	anti-parallel
Strand 3	F	282	294	anti-parallel
Strand 4	F	259	264	anti-parallel
Strand 5	F	179	185	anti-parallel
Strand 6	F	188	194	anti-parallel

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There are 5 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	254	257	first strand
Strand 2	F	222	227	anti-parallel
Strand 3	F	196	200	anti-parallel
Strand 4	F	139	142	anti-parallel
Strand 5	F	271	272	anti-parallel

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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	204	205	first strand
Strand 2	F	208	209	anti-parallel

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There are 7 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	134	136	first strand
Strand 2	G	123	131	anti-parallel
Strand 3	G	282	294	anti-parallel
Strand 4	G	259	264	anti-parallel
Strand 5	G	179	185	anti-parallel
Strand 6	G	188	200	anti-parallel
Strand 7	G	139	142	anti-parallel

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There are 8 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	134	136	first strand
Strand 2	G	123	131	anti-parallel
Strand 3	G	282	294	anti-parallel
Strand 4	G	259	264	anti-parallel
Strand 5	G	179	185	anti-parallel
Strand 6	G	188	200	anti-parallel
Strand 7	G	222	228	anti-parallel
Strand 8	G	252	257	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	205	first strand
Strand 2	G	208	209	anti-parallel

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There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	136	first strand
Strand 2	H	123	131	anti-parallel
Strand 3	H	282	294	anti-parallel
Strand 4	H	259	264	anti-parallel
Strand 5	H	179	185	anti-parallel
Strand 6	H	188	200	anti-parallel
Strand 7	H	222	228	anti-parallel
Strand 8	H	253	257	anti-parallel

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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	136	first strand
Strand 2	H	123	131	anti-parallel
Strand 3	H	282	294	anti-parallel
Strand 4	H	259	264	anti-parallel
Strand 5	H	179	185	anti-parallel
Strand 6	H	188	200	anti-parallel
Strand 7	H	139	142	anti-parallel
Strand 8	H	271	272	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	204	205	first strand
Strand 2	H	208	209	anti-parallel

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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	89	94	first strand
Strand 2	I	64	69	parallel
Strand 3	I	9	13	parallel
Strand 4	I	39	44	parallel
Strand 5	K	39	44	anti-parallel
Strand 6	K	9	13	parallel
Strand 7	K	64	69	parallel
Strand 8	K	89	94	parallel

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There are 8 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	134	136	first strand
Strand 2	I	123	131	anti-parallel
Strand 3	I	282	294	anti-parallel
Strand 4	I	259	264	anti-parallel
Strand 5	I	179	185	anti-parallel
Strand 6	I	189	200	anti-parallel
Strand 7	I	222	228	anti-parallel
Strand 8	I	253	257	anti-parallel

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There are 8 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	134	136	first strand
Strand 2	I	123	131	anti-parallel
Strand 3	I	282	294	anti-parallel
Strand 4	I	259	264	anti-parallel
Strand 5	I	179	185	anti-parallel
Strand 6	I	189	200	anti-parallel
Strand 7	I	139	142	anti-parallel
Strand 8	I	271	272	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	204	205	first strand
Strand 2	I	208	209	anti-parallel

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There are 8 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	134	136	first strand
Strand 2	J	123	131	anti-parallel
Strand 3	J	282	294	anti-parallel
Strand 4	J	259	264	anti-parallel
Strand 5	J	179	185	anti-parallel
Strand 6	J	188	200	anti-parallel
Strand 7	J	222	228	anti-parallel
Strand 8	J	253	257	anti-parallel

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There are 8 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	134	136	first strand
Strand 2	J	123	131	anti-parallel
Strand 3	J	282	294	anti-parallel
Strand 4	J	259	264	anti-parallel
Strand 5	J	179	185	anti-parallel
Strand 6	J	188	200	anti-parallel
Strand 7	J	139	142	anti-parallel
Strand 8	J	271	272	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	204	205	first strand
Strand 2	J	208	209	anti-parallel

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There are 7 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	134	136	first strand
Strand 2	K	123	131	anti-parallel
Strand 3	K	282	294	anti-parallel
Strand 4	K	259	264	anti-parallel
Strand 5	K	179	185	anti-parallel
Strand 6	K	188	200	anti-parallel
Strand 7	K	139	142	anti-parallel

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There are 8 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	134	136	first strand
Strand 2	K	123	131	anti-parallel
Strand 3	K	282	294	anti-parallel
Strand 4	K	259	264	anti-parallel
Strand 5	K	179	185	anti-parallel
Strand 6	K	188	200	anti-parallel
Strand 7	K	222	228	anti-parallel
Strand 8	K	253	257	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	204	205	first strand
Strand 2	K	208	209	anti-parallel

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There are 7 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	134	136	first strand
Strand 2	L	123	131	anti-parallel
Strand 3	L	282	294	anti-parallel
Strand 4	L	259	264	anti-parallel
Strand 5	L	179	185	anti-parallel
Strand 6	L	188	200	anti-parallel
Strand 7	L	139	142	anti-parallel

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There are 8 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	134	136	first strand
Strand 2	L	123	131	anti-parallel
Strand 3	L	282	294	anti-parallel
Strand 4	L	259	264	anti-parallel
Strand 5	L	179	185	anti-parallel
Strand 6	L	188	200	anti-parallel
Strand 7	L	222	228	anti-parallel
Strand 8	L	252	257	anti-parallel

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There are 2 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	204	205	first strand
Strand 2	L	208	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3T5P

Analysis of interatomic Contacts of Structural Units in PDB entry:
3T5P