Analysis of interatomic Contacts of Structural Units in PDB entry:
3T5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T5Q entry

There are 12 chains in PDB entry 3T5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 8SER 340
C
 U 1 A 8
B
 LYS 8GLU 339
D
 U 2 A 8
E
 LYS 8GLU 339
F
 U 1 A 8
G
 SER 9GLU 339
H
 U 2 C 7
I
 LYS 8GLU 339
J
 U 1 C 8
K
 LYS 8VAL 336
L
 U 2 C 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are102 helices in PDB entry 3T5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 21Right-handed alpha
Helix 2
2
A
22 24Right-handed 310
Helix 3
3
A
27 42Right-handed alpha
Helix 4
4
A
43 56Right-handed alpha
Helix 5
5
A
61 76Right-handed alpha
Helix 6
6
A
95 114Right-handed alpha
Helix 7
7
A
132 143Right-handed alpha
Helix 8
8
A
168 173Right-handed 310
Helix 9
9
A
179 192Right-handed alpha
Helix 10
10
A
194 209Right-handed alpha
Helix 11
11
A
215 223Right-handed alpha
Helix 12
12
A
226 232Right-handed 310
Helix 13
13
A
247 257Right-handed alpha
Helix 14
14
A
264 268Right-handed 310
Helix 15
15
A
274 290Right-handed alpha
Helix 16
16
A
301 312Right-handed alpha
Helix 17
17
A
329 333Right-handed alpha
Helix 18
18
B
9 21Right-handed alpha
Helix 19
19
B
22 24Right-handed 310
Helix 20
20
B
27 42Right-handed alpha
Helix 21
21
B
43 56Right-handed alpha
Helix 22
22
B
61 76Right-handed alpha
Helix 23
23
B
95 115Right-handed alpha
Helix 24
24
B
131 145Right-handed alpha
Helix 25
25
B
168 173Right-handed 310
Helix 26
26
B
179 192Right-handed alpha
Helix 27
27
B
194 209Right-handed alpha
Helix 28
28
B
215 223Right-handed alpha
Helix 29
29
B
226 232Right-handed 310
Helix 30
30
B
247 257Right-handed alpha
Helix 31
31
B
264 268Right-handed 310
Helix 32
32
B
274 290Right-handed alpha
Helix 33
33
B
301 312Right-handed alpha
Helix 34
34
B
329 333Right-handed alpha
Helix 35
35
E
9 21Right-handed alpha
Helix 36
36
E
22 24Right-handed 310
Helix 37
37
E
27 42Right-handed alpha
Helix 38
38
E
43 56Right-handed alpha
Helix 39
39
E
61 76Right-handed alpha
Helix 40
40
E
95 112Right-handed alpha
Helix 41
41
E
131 145Right-handed alpha
Helix 42
42
E
168 173Right-handed 310
Helix 43
43
E
179 192Right-handed alpha
Helix 44
44
E
194 210Right-handed alpha
Helix 45
45
E
215 223Right-handed alpha
Helix 46
46
E
226 232Right-handed 310
Helix 47
47
E
247 257Right-handed alpha
Helix 48
48
E
264 268Right-handed 310
Helix 49
49
E
274 290Right-handed alpha
Helix 50
50
E
301 312Right-handed alpha
Helix 51
51
E
329 333Right-handed alpha
Helix 52
52
G
10 21Right-handed alpha
Helix 53
53
G
22 24Right-handed 310
Helix 54
54
G
27 42Right-handed alpha
Helix 55
55
G
43 56Right-handed alpha
Helix 56
56
G
61 76Right-handed alpha
Helix 57
57
G
95 115Right-handed alpha
Helix 58
58
G
131 146Right-handed alpha
Helix 59
59
G
168 172Right-handed 310
Helix 60
60
G
179 192Right-handed alpha
Helix 61
61
G
194 209Right-handed alpha
Helix 62
62
G
215 223Right-handed alpha
Helix 63
63
G
226 232Right-handed 310
Helix 64
64
G
247 257Right-handed alpha
Helix 65
65
G
264 268Right-handed 310
Helix 66
66
G
274 290Right-handed alpha
Helix 67
67
G
301 312Right-handed alpha
Helix 68
68
G
329 333Right-handed alpha
Helix 69
69
I
9 21Right-handed alpha
Helix 70
70
I
22 24Right-handed 310
Helix 71
71
I
27 42Right-handed alpha
Helix 72
72
I
43 56Right-handed alpha
Helix 73
73
I
61 76Right-handed alpha
Helix 74
74
I
95 113Right-handed alpha
Helix 75
75
I
130 145Right-handed alpha
Helix 76
76
I
168 173Right-handed 310
Helix 77
77
I
179 192Right-handed alpha
Helix 78
78
I
194 210Right-handed alpha
Helix 79
79
I
215 223Right-handed alpha
Helix 80
80
I
226 232Right-handed 310
Helix 81
81
I
247 257Right-handed alpha
Helix 82
82
I
264 268Right-handed 310
Helix 83
83
I
274 290Right-handed alpha
Helix 84
84
I
301 312Right-handed alpha
Helix 85
85
I
329 333Right-handed alpha
Helix 86
86
K
9 21Right-handed alpha
Helix 87
87
K
22 24Right-handed 310
Helix 88
88
K
27 42Right-handed alpha
Helix 89
89
K
43 56Right-handed alpha
Helix 90
90
K
60 78Right-handed alpha
Helix 91
91
K
95 111Right-handed alpha
Helix 92
92
K
130 144Right-handed alpha
Helix 93
93
K
168 173Right-handed 310
Helix 94
94
K
179 192Right-handed alpha
Helix 95
95
K
194 209Right-handed alpha
Helix 96
96
K
215 223Right-handed alpha
Helix 97
97
K
226 232Right-handed 310
Helix 98
98
K
247 257Right-handed alpha
Helix 99
99
K
264 268Right-handed 310
Helix 100
100
K
274 290Right-handed alpha
Helix 101
101
K
301 312Right-handed alpha
Helix 102
102
K
329 333Right-handed alpha
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There are 11 sheets in PDB entry 3T5Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
163 165parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
334 336parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 60first strand
Strand 2
B
164 165parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 89first strand
Strand 2
B
334 336parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 60first strand
Strand 2
E
163 165parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
87 89first strand
Strand 2
E
334 336parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
59 60first strand
Strand 2
G
164 165parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
87 89first strand
Strand 2
G
334 336parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
59 60first strand
Strand 2
I
164 165parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
87 90first strand
Strand 2
I
334 337parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
87 88first strand
Strand 2
K
334 335parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il