Analysis of interatomic Contacts of Structural Units in PDB entry:
3T5V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T5V entry

There are 6 chains in PDB entry 3T5V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 253ASN 551
B
 ASP 2TRP 455
C
 GLU 23GLN 89
D
 PRO 252ASP 550
E
 ASP 2TRP 455
F
 GLU 30GLN 89
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 85 helices in PDB entry 3T5V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
257 272Right-handed alpha
Helix 2
2
A
273 276Right-handed 310
Helix 3
3
A
279 297Right-handed alpha
Helix 4
4
A
301 325Right-handed alpha
Helix 5
5
A
330 355Right-handed alpha
Helix 6
6
A
361 373Right-handed alpha
Helix 7
7
A
377 384Right-handed alpha
Helix 8
8
A
387 392Right-handed alpha
Helix 9
9
A
393 407Right-handed alpha
Helix 10
10
A
425 434Right-handed alpha
Helix 11
11
A
439 447Right-handed alpha
Helix 12
12
A
449 465Right-handed alpha
Helix 13
13
A
474 481Right-handed alpha
Helix 14
14
A
485 496Right-handed alpha
Helix 15
15
A
508 511Right-handed 310
Helix 16
16
A
529 538Right-handed alpha
Helix 17
17
A
540 546Right-handed alpha
Helix 18
18
B
3 14Right-handed alpha
Helix 19
19
B
26 40Right-handed alpha
Helix 20
20
B
41 52Right-handed alpha
Helix 21
21
B
58 75Right-handed alpha
Helix 22
22
B
83 96Right-handed alpha
Helix 23
23
B
105 130Right-handed alpha
Helix 24
24
B
130 135Right-handed alpha
Helix 25
25
B
139 156Right-handed alpha
Helix 26
26
B
169 189Right-handed alpha
Helix 27
27
B
194 201Right-handed alpha
Helix 28
28
B
201 206Right-handed alpha
Helix 29
29
B
210 214Right-handed 310
Helix 30
30
B
215 233Right-handed alpha
Helix 31
31
B
235 253Right-handed alpha
Helix 32
32
B
257 278Right-handed alpha
Helix 33
33
B
283 288Right-handed alpha
Helix 34
34
B
289 291Right-handed 310
Helix 35
35
B
292 309Right-handed alpha
Helix 36
36
B
310 321Right-handed alpha
Helix 37
37
B
321 328Right-handed alpha
Helix 38
38
B
330 355Right-handed alpha
Helix 39
39
B
365 377Right-handed alpha
Helix 40
40
B
399 410Right-handed alpha
Helix 41
41
B
431 435Right-handed 310
Helix 42
42
B
438 447Right-handed alpha
Helix 43
43
C
71 88Right-handed alpha
Helix 44
44
D
257 272Right-handed alpha
Helix 45
45
D
275 297Right-handed alpha
Helix 46
46
D
301 325Right-handed alpha
Helix 47
47
D
331 355Right-handed alpha
Helix 48
48
D
361 373Right-handed alpha
Helix 49
49
D
377 384Right-handed alpha
Helix 50
50
D
387 392Right-handed alpha
Helix 51
51
D
393 407Right-handed alpha
Helix 52
52
D
425 434Right-handed alpha
Helix 53
53
D
439 447Right-handed alpha
Helix 54
54
D
449 465Right-handed alpha
Helix 55
55
D
474 481Right-handed alpha
Helix 56
56
D
485 496Right-handed alpha
Helix 57
57
D
508 511Right-handed 310
Helix 58
58
D
529 538Right-handed alpha
Helix 59
59
D
540 546Right-handed alpha
Helix 60
60
E
3 14Right-handed alpha
Helix 61
61
E
26 38Right-handed alpha
Helix 62
62
E
41 52Right-handed alpha
Helix 63
63
E
58 75Right-handed alpha
Helix 64
64
E
80 82Right-handed 310
Helix 65
65
E
83 96Right-handed alpha
Helix 66
66
E
105 130Right-handed alpha
Helix 67
67
E
130 135Right-handed alpha
Helix 68
68
E
139 156Right-handed alpha
Helix 69
69
E
169 174Right-handed alpha
Helix 70
70
E
174 189Right-handed alpha
Helix 71
71
E
194 206Right-handed alpha
Helix 72
72
E
210 214Right-handed 310
Helix 73
73
E
215 233Right-handed alpha
Helix 74
74
E
235 253Right-handed alpha
Helix 75
75
E
257 278Right-handed alpha
Helix 76
76
E
284 291Right-handed 310
Helix 77
77
E
292 308Right-handed alpha
Helix 78
78
E
310 321Right-handed alpha
Helix 79
79
E
321 328Right-handed alpha
Helix 80
80
E
330 355Right-handed alpha
Helix 81
81
E
365 377Right-handed alpha
Helix 82
82
E
399 410Right-handed alpha
Helix 83
83
E
431 435Right-handed 310
Helix 84
84
E
438 447Right-handed alpha
Helix 85
85
F
71 89Right-handed alpha
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There are 5 sheets in PDB entry 3T5V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 473first strand
Strand 2
A
505 506anti-parallel
Strand 3
A
500 501anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 364first strand
Strand 2
B
423 426anti-parallel
Strand 3
B
415 418anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
472 473first strand
Strand 2
D
505 506anti-parallel
Strand 3
D
500 501anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
281 282first strand
Strand 2
F
60 61anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
362 364first strand
Strand 2
E
423 426anti-parallel
Strand 3
E
415 418anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il