Analysis of interatomic Contacts of Structural Units in PDB entry:
3T5X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T5X entry

There are 2 chains in PDB entry 3T5X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 205CYS 399
B
 VAL 38MET 67
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3T5X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
205 223Right-handed alpha
Helix 2
2
A
225 240Right-handed alpha
Helix 3
3
A
244 262Right-handed alpha
Helix 4
4
A
267 274Right-handed alpha
Helix 5
5
A
276 278Right-handed 310
Helix 6
6
A
279 289Right-handed alpha
Helix 7
7
A
290 301Right-handed alpha
Helix 8
8
A
301 308Right-handed alpha
Helix 9
9
A
310 316Right-handed alpha
Helix 10
10
A
316 334Right-handed alpha
Helix 11
11
A
340 350Right-handed alpha
Helix 12
12
A
356 370Right-handed alpha
Helix 13
13
A
394 398Right-handed 310
Helix 14
14
B
41 45Right-handed 310
Helix 15
15
B
50 63Right-handed alpha
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There are 2 sheets in PDB entry 3T5X. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
B
39 40anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
383 386anti-parallel
Strand 3
A
375 378anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il