Analysis of interatomic Contacts of Structural Units in PDB entry:
3T61


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T61 entry

There are 2 chains in PDB entry 3T61 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 13HIS 188
B
 ARG 13HIS 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3T61. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 41Right-handed alpha
Helix 2
2
A
48 51Right-handed 310
Helix 3
3
A
52 62Right-handed alpha
Helix 4
4
A
66 82Right-handed alpha
Helix 5
5
A
95 105Right-handed alpha
Helix 6
6
A
118 131Right-handed alpha
Helix 7
7
A
135 146Right-handed alpha
Helix 8
8
A
163 186Right-handed alpha
Helix 9
9
B
28 41Right-handed alpha
Helix 10
10
B
48 51Right-handed 310
Helix 11
11
B
52 62Right-handed alpha
Helix 12
12
B
66 82Right-handed alpha
Helix 13
13
B
95 105Right-handed alpha
Helix 14
14
B
118 131Right-handed alpha
Helix 15
15
B
135 146Right-handed alpha
Helix 16
16
B
163 186Right-handed alpha
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There are 2 sheets in PDB entry 3T61. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
88 90parallel
Strand 3
A
19 22parallel
Strand 4
A
111 116parallel
Strand 5
A
155 159parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
88 90parallel
Strand 3
B
18 22parallel
Strand 4
B
110 116parallel
Strand 5
B
155 159parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il