Analysis of interatomic Contacts of Structural Units in PDB entry:
3T6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T6J entry

There are 2 chains in PDB entry 3T6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2TRP 726
B
 VAL 1TRP 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 3T6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
20 26Right-handed alpha
Helix 3
3
A
27 45Right-handed alpha
Helix 4
4
A
46 53Right-handed alpha
Helix 5
5
A
55 70Right-handed alpha
Helix 6
6
A
71 82Right-handed alpha
Helix 7
7
A
85 102Right-handed alpha
Helix 8
8
A
119 129Right-handed alpha
Helix 9
9
A
130 134Right-handed 310
Helix 10
10
A
136 145Right-handed alpha
Helix 11
11
A
147 153Right-handed alpha
Helix 12
12
A
155 159Right-handed 310
Helix 13
13
A
177 191Right-handed alpha
Helix 14
14
A
228 234Right-handed alpha
Helix 15
15
A
251 267Right-handed alpha
Helix 16
16
A
271 288Right-handed alpha
Helix 17
17
A
289 303Right-handed alpha
Helix 18
18
A
340 349Right-handed alpha
Helix 19
19
A
349 354Right-handed alpha
Helix 20
20
A
355 357Right-handed 310
Helix 21
21
A
360 364Right-handed 310
Helix 22
22
A
395 402Right-handed alpha
Helix 23
23
A
410 414Right-handed alpha
Helix 24
24
A
431 456Right-handed alpha
Helix 25
25
A
494 500Right-handed alpha
Helix 26
26
A
502 520Right-handed alpha
Helix 27
27
A
521 528Right-handed alpha
Helix 28
28
A
534 553Right-handed alpha
Helix 29
29
A
566 583Right-handed alpha
Helix 30
30
A
613 631Right-handed alpha
Helix 31
31
A
633 645Right-handed alpha
Helix 32
32
A
654 665Right-handed alpha
Helix 33
33
A
692 702Right-handed alpha
Helix 34
34
A
707 723Right-handed alpha
Helix 35
35
A
724 726Right-handed 310
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There are 6 sheets in PDB entry 3T6J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
671 673parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 204first strand
Strand 2
A
210 216anti-parallel
Strand 3
A
242 247parallel
Strand 4
A
236 239anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 316first strand
Strand 2
A
327 336anti-parallel
Strand 3
A
373 382anti-parallel
Strand 4
A
405 409parallel
Strand 5
A
389 392anti-parallel
Strand 6
B
2 3anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 558first strand
Strand 2
A
563 564anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 590first strand
Strand 2
A
602 605anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
676 679first strand
Strand 2
A
684 687anti-parallel
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