Analysis of interatomic Contacts of Structural Units in PDB entry:
3T6Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T6Q entry

There are 3 chains in PDB entry 3T6Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 26SER 626
C
 GLY 26PHE 164
B
 GLN 26ASN 530
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3T6Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
139 143Right-handed 310
Helix 2
2
A
189 195Right-handed alpha
Helix 3
3
A
234 242Right-handed alpha
Helix 4
4
A
264 274Right-handed 310
Helix 5
5
A
335 344Right-handed 310
Helix 6
6
A
481 483Right-handed 310
Helix 7
7
A
490 495Right-handed 310
Helix 8
8
A
533 541Right-handed 310
Helix 9
9
A
559 561Right-handed 310
Helix 10
10
A
562 568Right-handed alpha
Helix 11
11
A
582 584Right-handed 310
Helix 12
12
A
585 595Right-handed alpha
Helix 13
13
A
601 605Right-handed 310
Helix 14
14
A
610 614Right-handed 310
Helix 15
15
A
617 621Right-handed 310
Helix 16
16
B
139 143Right-handed 310
Helix 17
17
B
189 195Right-handed alpha
Helix 18
18
B
234 242Right-handed alpha
Helix 19
19
B
264 274Right-handed 310
Helix 20
20
B
294 298Right-handed 310
Helix 21
21
B
335 344Right-handed 310
Helix 22
22
B
481 483Right-handed 310
Helix 23
23
B
533 541Right-handed 310
Helix 24
24
B
559 561Right-handed 310
Helix 25
25
B
562 569Right-handed alpha
Helix 26
26
B
582 584Right-handed 310
Helix 27
27
B
585 595Right-handed alpha
Helix 28
28
B
601 605Right-handed 310
Helix 29
29
B
610 614Right-handed 310
Helix 30
30
B
617 621Right-handed 310
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There are 18 sheets in PDB entry 3T6Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 25 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
36 38anti-parallel
Strand 3
A
57 59parallel
Strand 4
A
81 83parallel
Strand 5
A
105 107parallel
Strand 6
A
129 131parallel
Strand 7
A
153 155parallel
Strand 8
A
177 179parallel
Strand 9
A
202 205parallel
Strand 10
A
223 228parallel
Strand 11
A
246 251parallel
Strand 12
A
275 280parallel
Strand 13
A
302 304parallel
Strand 14
A
325 327parallel
Strand 15
A
349 351parallel
Strand 16
A
374 376parallel
Strand 17
A
400 402parallel
Strand 18
A
424 426parallel
Strand 19
A
449 451parallel
Strand 20
A
473 475parallel
Strand 21
A
500 502parallel
Strand 22
A
524 526parallel
Strand 23
A
547 549parallel
Strand 24
A
571 573parallel
Strand 25
A
599 600parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
91 92parallel
Strand 3
A
115 116parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
213 214parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 387first strand
Strand 2
A
409 411parallel
Strand 3
A
432 433parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 486first strand
Strand 2
A
510 511parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 580first strand
Strand 2
A
607 609parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 35first strand
Strand 2
C
38 44anti-parallel
Strand 3
C
151 161anti-parallel
Strand 4
C
136 145anti-parallel
Strand 5
C
81 89anti-parallel
Strand 6
C
92 103anti-parallel
Strand 7
C
106 107anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
52 55first strand
Strand 2
C
67 73anti-parallel
Strand 3
C
119 125anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 62first strand
Strand 2
C
131 132anti-parallel
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There are 25 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
36 38anti-parallel
Strand 3
B
57 59parallel
Strand 4
B
81 83parallel
Strand 5
B
105 107parallel
Strand 6
B
129 131parallel
Strand 7
B
153 155parallel
Strand 8
B
177 179parallel
Strand 9
B
203 205parallel
Strand 10
B
223 228parallel
Strand 11
B
246 251parallel
Strand 12
B
275 280parallel
Strand 13
B
302 304parallel
Strand 14
B
325 327parallel
Strand 15
B
349 351parallel
Strand 16
B
374 376parallel
Strand 17
B
400 402parallel
Strand 18
B
424 426parallel
Strand 19
B
449 451parallel
Strand 20
B
473 475parallel
Strand 21
B
500 502parallel
Strand 22
B
524 526parallel
Strand 23
B
547 549parallel
Strand 24
B
571 573parallel
Strand 25
B
599 600parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 68first strand
Strand 2
B
91 92parallel
Strand 3
B
115 116parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
213 214parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
384 387first strand
Strand 2
B
409 411parallel
Strand 3
B
432 433parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
485 486first strand
Strand 2
B
510 511parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
579 580first strand
Strand 2
B
607 609parallel
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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
30 35first strand
Strand 2
D
38 44anti-parallel
Strand 3
D
151 161anti-parallel
Strand 4
D
136 145anti-parallel
Strand 5
D
81 89anti-parallel
Strand 6
D
92 103anti-parallel
Strand 7
D
106 107anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
52 55first strand
Strand 2
D
67 73anti-parallel
Strand 3
D
119 125anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 62first strand
Strand 2
D
131 132anti-parallel
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