Analysis of interatomic Contacts of Structural Units in PDB entry:
3T6V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3T6V entry

There are 3 chains in PDB entry 3T6V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 1	HIS 495
B	VAL 1	HIS 495
C	VAL 1	HIS 495

There are 37 helices in PDB entry 3T6V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	55	59	Right-handed 310
Helix 2	2	A	74	78	Right-handed 310
Helix 3	3	A	115	120	Right-handed 310
Helix 4	4	A	134	138	Right-handed 310
Helix 5	5	A	142	144	Right-handed 310
Helix 6	6	A	156	160	Right-handed 310
Helix 7	7	A	273	277	Right-handed 310
Helix 8	8	A	305	309	Right-handed 310
Helix 9	9	A	354	361	Right-handed alpha
Helix 10	10	A	455	461	Right-handed alpha
Helix 11	11	A	473	478	Right-handed alpha
Helix 12	12	A	481	495	Right-handed alpha
Helix 13	13	B	55	59	Right-handed 310
Helix 14	14	B	74	78	Right-handed 310
Helix 15	15	B	115	120	Right-handed 310
Helix 16	16	B	134	138	Right-handed 310
Helix 17	17	B	142	144	Right-handed 310
Helix 18	18	B	156	160	Right-handed 310
Helix 19	19	B	273	277	Right-handed 310
Helix 20	20	B	305	309	Right-handed 310
Helix 21	21	B	354	361	Right-handed alpha
Helix 22	22	B	365	369	Right-handed 310
Helix 23	23	B	455	461	Right-handed alpha
Helix 24	24	B	473	478	Right-handed alpha
Helix 25	25	B	481	495	Right-handed alpha
Helix 26	26	C	55	59	Right-handed 310
Helix 27	27	C	74	78	Right-handed 310
Helix 28	28	C	134	138	Right-handed 310
Helix 29	29	C	142	144	Right-handed 310
Helix 30	30	C	156	160	Right-handed 310
Helix 31	31	C	273	277	Right-handed 310
Helix 32	32	C	305	309	Right-handed 310
Helix 33	33	C	354	362	Right-handed alpha
Helix 34	34	C	455	461	Right-handed alpha
Helix 35	35	C	470	478	Right-handed alpha
Helix 36	36	C	481	486	Right-handed alpha
Helix 37	37	C	486	495	Right-handed alpha

There are 21 sheets in PDB entry 3T6V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	36	40	parallel
Strand 3	A	122	128	parallel
Strand 4	A	105	111	anti-parallel
Strand 5	A	64	67	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	28	first strand
Strand 2	A	6	16	anti-parallel
Strand 3	A	44	51	parallel
Strand 4	A	93	99	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	173	first strand
Strand 2	A	146	152	anti-parallel
Strand 3	A	198	205	parallel
Strand 4	A	246	252	anti-parallel
Strand 5	A	221	226	anti-parallel
Strand 6	A	229	236	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	193	first strand
Strand 2	A	279	284	parallel
Strand 3	A	259	266	anti-parallel
Strand 4	A	212	216	anti-parallel
Strand 5	A	239	241	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	331	first strand
Strand 2	A	383	389	parallel
Strand 3	A	436	442	anti-parallel
Strand 4	A	406	410	anti-parallel
Strand 5	A	424	425	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	337	first strand
Strand 2	A	340	343	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	378	first strand
Strand 2	A	464	469	parallel
Strand 3	A	447	453	anti-parallel
Strand 4	A	398	401	anti-parallel
Strand 5	A	427	429	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	36	40	parallel
Strand 3	B	122	128	parallel
Strand 4	B	105	111	anti-parallel
Strand 5	B	64	67	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	28	first strand
Strand 2	B	6	16	anti-parallel
Strand 3	B	44	51	parallel
Strand 4	B	93	99	anti-parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	173	first strand
Strand 2	B	146	152	anti-parallel
Strand 3	B	198	205	parallel
Strand 4	B	246	252	anti-parallel
Strand 5	B	221	226	anti-parallel
Strand 6	B	229	236	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	193	first strand
Strand 2	B	279	284	parallel
Strand 3	B	259	266	anti-parallel
Strand 4	B	212	216	anti-parallel
Strand 5	B	239	241	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	331	first strand
Strand 2	B	383	389	parallel
Strand 3	B	436	442	anti-parallel
Strand 4	B	406	410	anti-parallel
Strand 5	B	424	425	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	337	first strand
Strand 2	B	340	343	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	378	first strand
Strand 2	B	464	469	parallel
Strand 3	B	447	453	anti-parallel
Strand 4	B	398	401	anti-parallel
Strand 5	B	427	429	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	36	40	parallel
Strand 3	C	122	128	parallel
Strand 4	C	105	111	anti-parallel
Strand 5	C	64	67	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	28	first strand
Strand 2	C	6	16	anti-parallel
Strand 3	C	44	51	parallel
Strand 4	C	93	99	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	173	first strand
Strand 2	C	146	152	anti-parallel
Strand 3	C	198	205	parallel
Strand 4	C	246	252	anti-parallel
Strand 5	C	221	226	anti-parallel
Strand 6	C	229	236	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	193	first strand
Strand 2	C	279	284	parallel
Strand 3	C	259	266	anti-parallel
Strand 4	C	212	216	anti-parallel
Strand 5	C	239	241	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	331	first strand
Strand 2	C	383	387	parallel
Strand 3	C	438	442	anti-parallel
Strand 4	C	406	410	anti-parallel
Strand 5	C	424	425	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	337	first strand
Strand 2	C	340	343	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	378	first strand
Strand 2	C	464	469	parallel
Strand 3	C	447	453	anti-parallel
Strand 4	C	398	401	anti-parallel
Strand 5	C	427	429	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3T6V

Analysis of interatomic Contacts of Structural Units in PDB entry:
3T6V