Analysis of interatomic Contacts of Structural Units in PDB entry:
3T88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T88 entry

There are 6 chains in PDB entry 3T88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 5PRO 285
B
 ASP 5PRO 285
C
 ASP 5PRO 285
D
 ASP 5PRO 285
E
 ASP 5PRO 285
F
 ASP 5PRO 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 3T88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 10Right-handed alpha
Helix 2
2
A
41 45Right-handed 310
Helix 3
3
A
49 66Right-handed alpha
Helix 4
4
A
87 91Right-handed 310
Helix 5
5
A
107 118Right-handed alpha
Helix 6
6
A
132 141Right-handed alpha
Helix 7
7
A
155 160Right-handed alpha
Helix 8
8
A
168 176Right-handed alpha
Helix 9
9
A
176 187Right-handed alpha
Helix 10
10
A
192 198Right-handed alpha
Helix 11
11
A
206 208Right-handed 310
Helix 12
12
A
209 223Right-handed alpha
Helix 13
13
A
225 238Right-handed alpha
Helix 14
14
A
241 259Right-handed alpha
Helix 15
15
A
260 272Right-handed alpha
Helix 16
16
A
277 281Right-handed 310
Helix 17
17
B
5 10Right-handed alpha
Helix 18
18
B
41 45Right-handed 310
Helix 19
19
B
49 66Right-handed alpha
Helix 20
20
B
87 89Right-handed 310
Helix 21
21
B
107 118Right-handed alpha
Helix 22
22
B
132 141Right-handed alpha
Helix 23
23
B
155 160Right-handed alpha
Helix 24
24
B
168 176Right-handed alpha
Helix 25
25
B
176 187Right-handed alpha
Helix 26
26
B
192 198Right-handed alpha
Helix 27
27
B
206 208Right-handed 310
Helix 28
28
B
209 223Right-handed alpha
Helix 29
29
B
225 239Right-handed alpha
Helix 30
30
B
241 259Right-handed alpha
Helix 31
31
B
260 272Right-handed alpha
Helix 32
32
C
5 10Right-handed alpha
Helix 33
33
C
41 45Right-handed 310
Helix 34
34
C
49 66Right-handed alpha
Helix 35
35
C
107 118Right-handed alpha
Helix 36
36
C
132 141Right-handed alpha
Helix 37
37
C
155 160Right-handed alpha
Helix 38
38
C
168 176Right-handed alpha
Helix 39
39
C
176 187Right-handed alpha
Helix 40
40
C
192 198Right-handed alpha
Helix 41
41
C
206 208Right-handed 310
Helix 42
42
C
209 223Right-handed alpha
Helix 43
43
C
225 239Right-handed alpha
Helix 44
44
C
241 259Right-handed alpha
Helix 45
45
C
260 272Right-handed alpha
Helix 46
46
D
5 10Right-handed alpha
Helix 47
47
D
41 45Right-handed 310
Helix 48
48
D
49 66Right-handed alpha
Helix 49
49
D
107 117Right-handed alpha
Helix 50
50
D
132 141Right-handed alpha
Helix 51
51
D
155 160Right-handed alpha
Helix 52
52
D
168 176Right-handed alpha
Helix 53
53
D
176 187Right-handed alpha
Helix 54
54
D
192 198Right-handed alpha
Helix 55
55
D
206 208Right-handed 310
Helix 56
56
D
209 223Right-handed alpha
Helix 57
57
D
225 239Right-handed alpha
Helix 58
58
D
241 258Right-handed alpha
Helix 59
59
D
260 272Right-handed alpha
Helix 60
60
E
5 10Right-handed alpha
Helix 61
61
E
41 45Right-handed 310
Helix 62
62
E
49 66Right-handed alpha
Helix 63
63
E
107 118Right-handed alpha
Helix 64
64
E
132 141Right-handed alpha
Helix 65
65
E
155 160Right-handed alpha
Helix 66
66
E
168 176Right-handed alpha
Helix 67
67
E
176 187Right-handed alpha
Helix 68
68
E
191 198Right-handed alpha
Helix 69
69
E
206 208Right-handed 310
Helix 70
70
E
209 223Right-handed alpha
Helix 71
71
E
225 238Right-handed alpha
Helix 72
72
E
241 259Right-handed alpha
Helix 73
73
E
260 272Right-handed alpha
Helix 74
74
F
5 10Right-handed alpha
Helix 75
75
F
41 45Right-handed 310
Helix 76
76
F
49 66Right-handed alpha
Helix 77
77
F
107 118Right-handed alpha
Helix 78
78
F
132 141Right-handed alpha
Helix 79
79
F
155 160Right-handed alpha
Helix 80
80
F
168 176Right-handed alpha
Helix 81
81
F
176 187Right-handed alpha
Helix 82
82
F
192 199Right-handed alpha
Helix 83
83
F
206 208Right-handed 310
Helix 84
84
F
209 223Right-handed alpha
Helix 85
85
F
225 239Right-handed alpha
Helix 86
86
F
241 259Right-handed alpha
Helix 87
87
F
260 272Right-handed alpha
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There are 18 sheets in PDB entry 3T88. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
25 30anti-parallel
Strand 3
A
34 39anti-parallel
Strand 4
A
71 76parallel
Strand 5
A
122 126parallel
Strand 6
A
143 147parallel
Strand 7
A
203 205parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
129 131parallel
Strand 3
A
151 153parallel
Strand 4
A
190 191anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
104 105anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
25 30anti-parallel
Strand 3
B
34 39anti-parallel
Strand 4
B
71 76parallel
Strand 5
B
122 126parallel
Strand 6
B
143 147parallel
Strand 7
B
203 205parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
129 131parallel
Strand 3
B
151 153parallel
Strand 4
B
190 191anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 92first strand
Strand 2
B
96 98anti-parallel
Strand 3
B
104 105anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 17first strand
Strand 2
C
25 30anti-parallel
Strand 3
C
34 39anti-parallel
Strand 4
C
71 76parallel
Strand 5
C
122 126parallel
Strand 6
C
143 147parallel
Strand 7
C
203 205parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 83first strand
Strand 2
C
129 131parallel
Strand 3
C
151 153parallel
Strand 4
C
190 191anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 98first strand
Strand 2
C
104 105anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 17first strand
Strand 2
D
25 30anti-parallel
Strand 3
D
34 39anti-parallel
Strand 4
D
71 76parallel
Strand 5
D
122 126parallel
Strand 6
D
143 147parallel
Strand 7
D
203 205parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
81 83first strand
Strand 2
D
129 131parallel
Strand 3
D
151 153parallel
Strand 4
D
190 191anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
97 98first strand
Strand 2
D
104 105anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
15 17first strand
Strand 2
E
25 30anti-parallel
Strand 3
E
34 39anti-parallel
Strand 4
E
71 76parallel
Strand 5
E
122 126parallel
Strand 6
E
143 147parallel
Strand 7
E
203 205parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
81 83first strand
Strand 2
E
129 131parallel
Strand 3
E
151 153parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
97 98first strand
Strand 2
E
104 105anti-parallel
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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
15 17first strand
Strand 2
F
25 30anti-parallel
Strand 3
F
34 39anti-parallel
Strand 4
F
71 76parallel
Strand 5
F
122 126parallel
Strand 6
F
143 147parallel
Strand 7
F
203 205parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
81 83first strand
Strand 2
F
129 131parallel
Strand 3
F
151 153parallel
Strand 4
F
190 191anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
97 98first strand
Strand 2
F
104 105anti-parallel
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