Analysis of interatomic Contacts of Structural Units in PDB entry:
3T8I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T8I entry

There are 4 chains in PDB entry 3T8I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 306
B
 MET 1GLN 306
C
 MET 1GLN 306
D
 MET 1GLN 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 3T8I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
38 53Right-handed alpha
Helix 3
3
A
75 80Right-handed alpha
Helix 4
4
A
100 112Right-handed alpha
Helix 5
5
A
124 134Right-handed alpha
Helix 6
6
A
135 140Right-handed 310
Helix 7
7
A
161 167Right-handed alpha
Helix 8
8
A
167 177Right-handed alpha
Helix 9
9
A
185 193Right-handed alpha
Helix 10
10
A
197 207Right-handed alpha
Helix 11
11
A
208 218Right-handed alpha
Helix 12
12
A
218 230Right-handed alpha
Helix 13
13
A
236 247Right-handed alpha
Helix 14
14
A
264 268Right-handed 310
Helix 15
15
A
292 306Right-handed alpha
Helix 16
16
B
12 25Right-handed alpha
Helix 17
17
B
38 53Right-handed alpha
Helix 18
18
B
75 80Right-handed alpha
Helix 19
19
B
100 112Right-handed alpha
Helix 20
20
B
124 134Right-handed alpha
Helix 21
21
B
136 141Right-handed alpha
Helix 22
22
B
161 167Right-handed alpha
Helix 23
23
B
167 177Right-handed alpha
Helix 24
24
B
185 193Right-handed alpha
Helix 25
25
B
197 207Right-handed alpha
Helix 26
26
B
208 230Right-handed alpha
Helix 27
27
B
236 247Right-handed alpha
Helix 28
28
B
264 268Right-handed 310
Helix 29
29
B
292 306Right-handed alpha
Helix 30
30
C
12 25Right-handed alpha
Helix 31
31
C
38 53Right-handed alpha
Helix 32
32
C
75 80Right-handed alpha
Helix 33
33
C
100 112Right-handed alpha
Helix 34
34
C
124 134Right-handed alpha
Helix 35
35
C
136 140Right-handed alpha
Helix 36
36
C
161 167Right-handed alpha
Helix 37
37
C
167 176Right-handed alpha
Helix 38
38
C
185 193Right-handed alpha
Helix 39
39
C
197 206Right-handed alpha
Helix 40
40
C
208 218Right-handed alpha
Helix 41
41
C
218 230Right-handed alpha
Helix 42
42
C
236 247Right-handed alpha
Helix 43
43
C
264 268Right-handed 310
Helix 44
44
C
292 306Right-handed alpha
Helix 45
45
D
12 25Right-handed alpha
Helix 46
46
D
38 53Right-handed alpha
Helix 47
47
D
75 80Right-handed alpha
Helix 48
48
D
100 112Right-handed alpha
Helix 49
49
D
124 134Right-handed alpha
Helix 50
50
D
136 140Right-handed alpha
Helix 51
51
D
161 167Right-handed alpha
Helix 52
52
D
167 177Right-handed alpha
Helix 53
53
D
185 193Right-handed alpha
Helix 54
54
D
197 207Right-handed alpha
Helix 55
55
D
208 218Right-handed alpha
Helix 56
56
D
218 230Right-handed alpha
Helix 57
57
D
236 247Right-handed alpha
Helix 58
58
D
292 305Right-handed alpha
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There are 12 sheets in PDB entry 3T8I. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
26 32parallel
Strand 3
A
3 8parallel
Strand 4
A
116 120parallel
Strand 5
A
143 147parallel
Strand 6
A
181 184parallel
Strand 7
A
285 291parallel
Strand 8
A
251 257anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
233 235anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
271 273anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
26 32parallel
Strand 3
B
3 8parallel
Strand 4
B
116 121parallel
Strand 5
B
143 147parallel
Strand 6
B
181 184parallel
Strand 7
B
285 291parallel
Strand 8
B
251 257anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 196first strand
Strand 2
B
233 235anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 261first strand
Strand 2
B
271 273anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 62first strand
Strand 2
C
26 32parallel
Strand 3
C
3 8parallel
Strand 4
C
116 121parallel
Strand 5
C
141 147parallel
Strand 6
C
181 184parallel
Strand 7
C
285 291parallel
Strand 8
C
251 257anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
194 196first strand
Strand 2
C
233 235anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
259 261first strand
Strand 2
C
271 273anti-parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 62first strand
Strand 2
D
26 32parallel
Strand 3
D
3 8parallel
Strand 4
D
116 120parallel
Strand 5
D
141 147parallel
Strand 6
D
181 184parallel
Strand 7
D
285 291parallel
Strand 8
D
251 257anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
194 196first strand
Strand 2
D
233 235anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
259 261first strand
Strand 2
D
271 273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il