Analysis of interatomic Contacts of Structural Units in PDB entry:
3T8J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T8J entry

There is 1 chain in PDB entry 3T8J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3T8J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 24Right-handed alpha
Helix 2
2
A
39 54Right-handed alpha
Helix 3
3
A
75 80Right-handed alpha
Helix 4
4
A
100 112Right-handed alpha
Helix 5
5
A
124 134Right-handed alpha
Helix 6
6
A
136 140Right-handed alpha
Helix 7
7
A
162 168Right-handed alpha
Helix 8
8
A
168 178Right-handed alpha
Helix 9
9
A
186 191Right-handed alpha
Helix 10
10
A
196 205Right-handed alpha
Helix 11
11
A
208 228Right-handed alpha
Helix 12
12
A
236 247Right-handed alpha
Helix 13
13
A
296 309Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3T8J.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
27 33parallel
Strand 3
A
3 8parallel
Strand 4
A
116 120parallel
Strand 5
A
141 147parallel
Strand 6
A
182 185parallel
Strand 7
A
289 295parallel
Strand 8
A
251 261anti-parallel
Strand 9
A
272 275anti-parallel
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