Analysis of interatomic Contacts of Structural Units in PDB entry:
3T8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T8L entry

There are 2 chains in PDB entry 3T8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 9VAL 595
B
 ALA 8GLU 594
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 3T8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
15 28Right-handed alpha
Helix 3
3
A
94 99Right-handed 310
Helix 4
4
A
101 111Right-handed alpha
Helix 5
5
A
121 129Right-handed alpha
Helix 6
6
A
129 141Right-handed alpha
Helix 7
7
A
169 179Right-handed alpha
Helix 8
8
A
190 196Right-handed alpha
Helix 9
9
A
198 212Right-handed alpha
Helix 10
10
A
223 234Right-handed alpha
Helix 11
11
A
243 253Right-handed alpha
Helix 12
12
A
263 265Right-handed 310
Helix 13
13
A
266 278Right-handed alpha
Helix 14
14
A
292 299Right-handed alpha
Helix 15
15
A
301 312Right-handed alpha
Helix 16
16
A
315 324Right-handed alpha
Helix 17
17
A
324 331Right-handed alpha
Helix 18
18
A
382 387Right-handed 310
Helix 19
19
A
396 401Right-handed 310
Helix 20
20
A
488 502Right-handed alpha
Helix 21
21
A
530 547Right-handed alpha
Helix 22
22
A
557 563Right-handed 310
Helix 23
23
B
10 15Right-handed alpha
Helix 24
24
B
15 28Right-handed alpha
Helix 25
25
B
94 99Right-handed 310
Helix 26
26
B
101 111Right-handed alpha
Helix 27
27
B
121 129Right-handed alpha
Helix 28
28
B
129 141Right-handed alpha
Helix 29
29
B
169 177Right-handed alpha
Helix 30
30
B
190 197Right-handed alpha
Helix 31
31
B
198 212Right-handed alpha
Helix 32
32
B
223 233Right-handed alpha
Helix 33
33
B
245 253Right-handed alpha
Helix 34
34
B
263 265Right-handed 310
Helix 35
35
B
266 278Right-handed alpha
Helix 36
36
B
292 299Right-handed alpha
Helix 37
37
B
301 312Right-handed alpha
Helix 38
38
B
315 324Right-handed alpha
Helix 39
39
B
324 331Right-handed alpha
Helix 40
40
B
383 387Right-handed 310
Helix 41
41
B
397 401Right-handed 310
Helix 42
42
B
488 502Right-handed alpha
Helix 43
43
B
530 546Right-handed alpha
Helix 44
44
B
559 564Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 3T8L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 65first strand
Strand 2
A
53 57anti-parallel
Strand 3
A
34 37anti-parallel
Strand 4
A
76 78parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
40 43anti-parallel
Strand 3
A
83 86parallel
Strand 4
A
347 350anti-parallel
Strand 5
A
358 363anti-parallel
Strand 6
A
366 370anti-parallel
Strand 7
A
373 374anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
114 119parallel
Strand 3
A
146 151parallel
Strand 4
A
182 188parallel
Strand 5
A
214 217parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
256 259parallel
Strand 3
A
284 286parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 428first strand
Strand 2
A
408 415anti-parallel
Strand 3
A
456 462parallel
Strand 4
A
441 446anti-parallel
Strand 5
A
482 486anti-parallel
Strand 6
A
470 473anti-parallel
Strand 7
A
505 510anti-parallel
Strand 8
A
513 519anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 428first strand
Strand 2
A
408 415anti-parallel
Strand 3
A
592 594anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
573 574first strand
Strand 2
A
579 581anti-parallel
Strand 3
A
586 587anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 65first strand
Strand 2
B
53 57anti-parallel
Strand 3
B
32 37anti-parallel
Strand 4
B
73 78parallel
Back to list of sheets
Back to top of page

There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
40 42anti-parallel
Strand 3
B
83 86parallel
Strand 4
B
347 350anti-parallel
Strand 5
B
358 363anti-parallel
Strand 6
B
366 370anti-parallel
Strand 7
B
373 374anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 93first strand
Strand 2
B
114 119parallel
Strand 3
B
146 151parallel
Strand 4
B
182 185parallel
Strand 5
B
214 215parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 238first strand
Strand 2
B
256 260parallel
Strand 3
B
284 287parallel
Back to list of sheets
Back to top of page

There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
457 458first strand
Strand 2
B
442 446anti-parallel
Strand 3
B
482 486anti-parallel
Strand 4
B
469 473anti-parallel
Strand 5
B
505 510anti-parallel
Strand 6
B
513 519anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
579 580first strand
Strand 2
B
587 588anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il