Analysis of interatomic Contacts of Structural Units in PDB entry:
3T9Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3T9Q entry

There are 2 chains in PDB entry 3T9Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 588TRP 811
B
 MET 589ILE 819
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3T9Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
641 652Right-handed alpha
Helix 2
2
A
656 670Right-handed alpha
Helix 3
3
A
745 750Right-handed alpha
Helix 4
4
A
757 768Right-handed alpha
Helix 5
5
A
773 789Right-handed alpha
Helix 6
6
B
601 605Right-handed 310
Helix 7
7
B
642 653Right-handed alpha
Helix 8
8
B
656 669Right-handed alpha
Helix 9
9
B
745 750Right-handed alpha
Helix 10
10
B
757 768Right-handed alpha
Helix 11
11
B
773 787Right-handed alpha
Helix 12
12
B
788 790Right-handed 310
Helix 13
13
B
809 814Right-handed alpha
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There are 4 sheets in PDB entry 3T9Q. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 600first strand
Strand 2
B
797 805anti-parallel
Strand 3
B
740 744anti-parallel
Strand 4
B
703 705anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
728 734first strand
Strand 2
A
691 697anti-parallel
Strand 3
A
679 686anti-parallel
Strand 4
B
621 628anti-parallel
Strand 5
B
610 617anti-parallel
Strand 6
A
610 617anti-parallel
Strand 7
A
621 628anti-parallel
Strand 8
B
679 686anti-parallel
Strand 9
B
691 697anti-parallel
Strand 10
B
728 734anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
638 640first strand
Strand 2
B
638 640anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
711 712first strand
Strand 2
A
703 704anti-parallel
Strand 3
A
740 744anti-parallel
Strand 4
A
797 805anti-parallel
Strand 5
B
592 600anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il