Analysis of interatomic Contacts of Structural Units in PDB entry:
3TBE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TBE entry

There are 6 chains in PDB entry 3TBE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3ASP 211
B
 ASN 5GLU 205
C
 ASN 5THR 207
D
 ALA 4THR 207
E
 HIS 3THR 207
F
 ILE 6LYS 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 3TBE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 15Right-handed alpha
Helix 2
2
A
17 33Right-handed alpha
Helix 3
3
A
64 68Right-handed 310
Helix 4
4
A
79 82Right-handed 310
Helix 5
5
A
92 97Right-handed alpha
Helix 6
6
A
129 137Right-handed 310
Helix 7
7
A
167 171Right-handed 310
Helix 8
8
B
6 15Right-handed alpha
Helix 9
9
B
17 33Right-handed alpha
Helix 10
10
B
64 68Right-handed 310
Helix 11
11
B
79 82Right-handed 310
Helix 12
12
B
133 137Right-handed 310
Helix 13
13
B
167 171Right-handed 310
Helix 14
14
C
6 16Right-handed alpha
Helix 15
15
C
17 38Right-handed alpha
Helix 16
16
C
64 68Right-handed 310
Helix 17
17
C
92 97Right-handed alpha
Helix 18
18
C
133 137Right-handed 310
Helix 19
19
C
167 171Right-handed 310
Helix 20
20
D
8 15Right-handed alpha
Helix 21
21
D
17 38Right-handed alpha
Helix 22
22
D
64 68Right-handed 310
Helix 23
23
D
92 97Right-handed alpha
Helix 24
24
D
129 137Right-handed 310
Helix 25
25
D
167 171Right-handed 310
Helix 26
26
E
7 15Right-handed alpha
Helix 27
27
E
17 37Right-handed alpha
Helix 28
28
E
49 53Right-handed 310
Helix 29
29
E
64 68Right-handed 310
Helix 30
30
E
79 82Right-handed 310
Helix 31
31
E
133 137Right-handed 310
Helix 32
32
E
167 171Right-handed 310
Helix 33
33
F
7 15Right-handed alpha
Helix 34
34
F
17 38Right-handed alpha
Helix 35
35
F
64 68Right-handed 310
Helix 36
36
F
79 82Right-handed 310
Helix 37
37
F
94 98Right-handed 310
Helix 38
38
F
133 137Right-handed 310
Helix 39
39
F
167 171Right-handed 310
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There are 3 sheets in PDB entry 3TBE. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 18 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 162first strand
Strand 2
A
142 147anti-parallel
Strand 3
A
74 78anti-parallel
Strand 4
A
83 89anti-parallel
Strand 5
A
100 102parallel
Strand 6
A
115 120anti-parallel
Strand 7
A
177 185parallel
Strand 8
A
192 201anti-parallel
Strand 9
A
150 162anti-parallel
Strand 10
B
150 162anti-parallel
Strand 11
B
192 201anti-parallel
Strand 12
B
177 185anti-parallel
Strand 13
B
115 120parallel
Strand 14
B
100 102anti-parallel
Strand 15
B
84 88parallel
Strand 16
B
74 77anti-parallel
Strand 17
B
142 147anti-parallel
Strand 18
B
150 162anti-parallel
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There are 18 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 162first strand
Strand 2
C
142 147anti-parallel
Strand 3
C
74 78anti-parallel
Strand 4
C
83 89anti-parallel
Strand 5
C
100 102parallel
Strand 6
C
116 120anti-parallel
Strand 7
C
178 185parallel
Strand 8
C
192 201anti-parallel
Strand 9
C
150 162anti-parallel
Strand 10
D
150 162anti-parallel
Strand 11
D
192 201anti-parallel
Strand 12
D
177 185anti-parallel
Strand 13
D
115 120parallel
Strand 14
D
100 102anti-parallel
Strand 15
D
83 88parallel
Strand 16
D
74 78anti-parallel
Strand 17
D
142 147anti-parallel
Strand 18
D
150 162anti-parallel
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There are 18 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
150 162first strand
Strand 2
E
142 147anti-parallel
Strand 3
E
74 78anti-parallel
Strand 4
E
83 88anti-parallel
Strand 5
E
100 102parallel
Strand 6
E
115 120anti-parallel
Strand 7
E
177 185parallel
Strand 8
E
192 201anti-parallel
Strand 9
E
150 162anti-parallel
Strand 10
F
150 162anti-parallel
Strand 11
F
192 201anti-parallel
Strand 12
F
177 185anti-parallel
Strand 13
F
115 120parallel
Strand 14
F
100 102anti-parallel
Strand 15
F
83 88parallel
Strand 16
F
74 78anti-parallel
Strand 17
F
142 147anti-parallel
Strand 18
F
150 162anti-parallel
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