Analysis of interatomic Contacts of Structural Units in PDB entry:
3TCF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3TCF entry

There are 3 chains in PDB entry 3TCF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 27	HIS 543
B	ALA 27	HIS 543
C	ALA 27	ASN 245

There are191 helices in PDB entry 3TCF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	59	70	Right-handed alpha
Helix 2	2	A	115	128	Right-handed alpha
Helix 3	3	A	129	132	Right-handed 310
Helix 4	4	A	138	143	Right-handed 310
Helix 5	5	A	146	152	Right-handed alpha
Helix 6	6	A	156	160	Right-handed 310
Helix 7	7	A	180	185	Right-handed alpha
Helix 8	8	A	186	191	Right-handed 310
Helix 9	9	A	194	202	Right-handed alpha
Helix 10	10	A	203	207	Right-handed 310
Helix 11	11	A	238	242	Right-handed 310
Helix 12	12	A	254	264	Right-handed alpha
Helix 13	13	A	278	286	Right-handed alpha
Helix 14	14	A	312	323	Right-handed alpha
Helix 15	15	A	324	330	Right-handed alpha
Helix 16	16	A	331	336	Right-handed 310
Helix 17	17	A	356	361	Right-handed 310
Helix 18	18	A	362	378	Right-handed alpha
Helix 19	19	A	394	413	Right-handed alpha
Helix 20	20	A	422	433	Right-handed alpha
Helix 21	21	A	449	454	Right-handed alpha
Helix 22	22	A	455	457	Right-handed 310
Helix 23	23	A	469	479	Right-handed alpha
Helix 24	24	A	484	502	Right-handed alpha
Helix 25	25	A	534	538	Right-handed 310
Helix 26	26	B	53	57	Right-handed 310
Helix 27	27	B	59	70	Right-handed alpha
Helix 28	28	B	115	128	Right-handed alpha
Helix 29	29	B	129	132	Right-handed 310
Helix 30	30	B	137	142	Right-handed alpha
Helix 31	31	B	146	152	Right-handed alpha
Helix 32	32	B	156	160	Right-handed 310
Helix 33	33	B	180	191	Right-handed 310
Helix 34	34	B	194	202	Right-handed alpha
Helix 35	35	B	203	207	Right-handed 310
Helix 36	36	B	238	242	Right-handed 310
Helix 37	37	B	254	264	Right-handed alpha
Helix 38	38	B	278	286	Right-handed alpha
Helix 39	39	B	312	323	Right-handed alpha
Helix 40	40	B	324	332	Right-handed alpha
Helix 41	41	B	333	336	Right-handed 310
Helix 42	42	B	356	361	Right-handed 310
Helix 43	43	B	362	377	Right-handed alpha
Helix 44	44	B	394	413	Right-handed alpha
Helix 45	45	B	422	433	Right-handed alpha
Helix 46	46	B	449	454	Right-handed alpha
Helix 47	47	B	455	457	Right-handed 310
Helix 48	48	B	469	480	Right-handed alpha
Helix 49	49	B	484	502	Right-handed alpha
Helix 50	50	B	534	538	Right-handed 310
Helix 51	51	C	59	70	Right-handed alpha
Helix 52	52	C	115	127	Right-handed alpha
Helix 53	53	C	137	143	Right-handed alpha
Helix 54	54	C	146	152	Right-handed alpha
Helix 55	55	C	156	160	Right-handed 310
Helix 56	56	C	180	185	Right-handed alpha
Helix 57	57	C	186	191	Right-handed 310
Helix 58	58	C	194	202	Right-handed alpha
Helix 59	59	C	203	207	Right-handed 310
Helix 60	60	C	238	242	Right-handed 310
Helix 61	61	C	254	264	Right-handed alpha
Helix 62	62	C	275	277	Right-handed 310
Helix 63	63	C	278	286	Right-handed alpha
Helix 64	64	C	312	323	Right-handed alpha
Helix 65	65	C	324	332	Right-handed alpha
Helix 66	66	C	356	361	Right-handed 310
Helix 67	67	C	362	377	Right-handed alpha
Helix 68	68	C	394	413	Right-handed alpha
Helix 69	69	C	422	433	Right-handed alpha
Helix 70	70	C	449	454	Right-handed alpha
Helix 71	71	C	455	457	Right-handed 310
Helix 72	72	C	469	479	Right-handed alpha
Helix 73	73	C	484	502	Right-handed alpha
Helix 74	74	C	534	538	Right-handed 310
Helix 75	75	D	59	70	Right-handed alpha
Helix 76	76	D	115	128	Right-handed alpha
Helix 77	77	D	129	132	Right-handed 310
Helix 78	78	D	137	143	Right-handed 310
Helix 79	79	D	146	152	Right-handed alpha
Helix 80	80	D	156	160	Right-handed 310
Helix 81	81	D	180	191	Right-handed 310
Helix 82	82	D	194	202	Right-handed alpha
Helix 83	83	D	203	205	Right-handed 310
Helix 84	84	D	238	242	Right-handed 310
Helix 85	85	D	254	264	Right-handed alpha
Helix 86	86	D	278	286	Right-handed alpha
Helix 87	87	D	312	323	Right-handed alpha
Helix 88	88	D	324	332	Right-handed alpha
Helix 89	89	D	356	361	Right-handed 310
Helix 90	90	D	362	378	Right-handed alpha
Helix 91	91	D	394	413	Right-handed alpha
Helix 92	92	D	422	433	Right-handed alpha
Helix 93	93	D	449	454	Right-handed alpha
Helix 94	94	D	455	457	Right-handed 310
Helix 95	95	D	469	480	Right-handed alpha
Helix 96	96	D	484	502	Right-handed alpha
Helix 97	97	D	534	538	Right-handed 310
Helix 98	98	E	59	70	Right-handed alpha
Helix 99	99	E	115	128	Right-handed alpha
Helix 100	100	E	129	132	Right-handed 310
Helix 101	101	E	138	143	Right-handed 310
Helix 102	102	E	146	152	Right-handed alpha
Helix 103	103	E	156	160	Right-handed 310
Helix 104	104	E	180	191	Right-handed 310
Helix 105	105	E	194	202	Right-handed alpha
Helix 106	106	E	203	205	Right-handed 310
Helix 107	107	E	238	242	Right-handed 310
Helix 108	108	E	254	264	Right-handed alpha
Helix 109	109	E	278	286	Right-handed alpha
Helix 110	110	E	312	323	Right-handed alpha
Helix 111	111	E	324	332	Right-handed alpha
Helix 112	112	E	356	361	Right-handed 310
Helix 113	113	E	362	377	Right-handed alpha
Helix 114	114	E	394	413	Right-handed alpha
Helix 115	115	E	422	433	Right-handed alpha
Helix 116	116	E	449	454	Right-handed alpha
Helix 117	117	E	455	457	Right-handed 310
Helix 118	118	E	469	480	Right-handed alpha
Helix 119	119	E	484	502	Right-handed alpha
Helix 120	120	E	534	538	Right-handed 310
Helix 121	121	F	59	70	Right-handed alpha
Helix 122	122	F	115	128	Right-handed alpha
Helix 123	123	F	129	132	Right-handed 310
Helix 124	124	F	138	143	Right-handed 310
Helix 125	125	F	146	152	Right-handed alpha
Helix 126	126	F	156	160	Right-handed 310
Helix 127	127	F	180	191	Right-handed 310
Helix 128	128	F	194	202	Right-handed alpha
Helix 129	129	F	203	207	Right-handed 310
Helix 130	130	F	238	242	Right-handed 310
Helix 131	131	F	254	264	Right-handed alpha
Helix 132	132	F	278	286	Right-handed alpha
Helix 133	133	F	312	323	Right-handed alpha
Helix 134	134	F	324	332	Right-handed alpha
Helix 135	135	F	356	361	Right-handed 310
Helix 136	136	F	362	378	Right-handed alpha
Helix 137	137	F	394	413	Right-handed alpha
Helix 138	138	F	422	433	Right-handed alpha
Helix 139	139	F	449	454	Right-handed alpha
Helix 140	140	F	455	457	Right-handed 310
Helix 141	141	F	469	480	Right-handed alpha
Helix 142	142	F	484	502	Right-handed alpha
Helix 143	143	F	534	538	Right-handed 310
Helix 144	144	G	53	57	Right-handed 310
Helix 145	145	G	59	70	Right-handed alpha
Helix 146	146	G	115	128	Right-handed alpha
Helix 147	147	G	137	141	Right-handed 310
Helix 148	148	G	146	152	Right-handed alpha
Helix 149	149	G	156	160	Right-handed 310
Helix 150	150	G	180	191	Right-handed 310
Helix 151	151	G	194	202	Right-handed alpha
Helix 152	152	G	203	207	Right-handed 310
Helix 153	153	G	238	242	Right-handed 310
Helix 154	154	G	254	264	Right-handed alpha
Helix 155	155	G	278	286	Right-handed alpha
Helix 156	156	G	312	323	Right-handed alpha
Helix 157	157	G	324	330	Right-handed alpha
Helix 158	158	G	331	336	Right-handed 310
Helix 159	159	G	356	361	Right-handed 310
Helix 160	160	G	362	377	Right-handed alpha
Helix 161	161	G	394	413	Right-handed alpha
Helix 162	162	G	422	433	Right-handed alpha
Helix 163	163	G	449	454	Right-handed alpha
Helix 164	164	G	455	457	Right-handed 310
Helix 165	165	G	469	480	Right-handed alpha
Helix 166	166	G	484	502	Right-handed alpha
Helix 167	167	G	534	538	Right-handed 310
Helix 168	168	H	59	70	Right-handed alpha
Helix 169	169	H	115	128	Right-handed alpha
Helix 170	170	H	137	142	Right-handed alpha
Helix 171	171	H	146	152	Right-handed alpha
Helix 172	172	H	156	160	Right-handed 310
Helix 173	173	H	180	185	Right-handed alpha
Helix 174	174	H	186	191	Right-handed 310
Helix 175	175	H	194	202	Right-handed alpha
Helix 176	176	H	203	205	Right-handed 310
Helix 177	177	H	238	242	Right-handed 310
Helix 178	178	H	254	264	Right-handed alpha
Helix 179	179	H	278	286	Right-handed alpha
Helix 180	180	H	312	323	Right-handed alpha
Helix 181	181	H	324	332	Right-handed alpha
Helix 182	182	H	333	336	Right-handed 310
Helix 183	183	H	356	361	Right-handed alpha
Helix 184	184	H	362	377	Right-handed alpha
Helix 185	185	H	394	413	Right-handed alpha
Helix 186	186	H	422	433	Right-handed alpha
Helix 187	187	H	449	454	Right-handed alpha
Helix 188	188	H	455	457	Right-handed 310
Helix 189	189	H	469	479	Right-handed alpha
Helix 190	190	H	485	502	Right-handed alpha
Helix 191	191	H	534	538	Right-handed 310

There are 39 sheets in PDB entry 3TCF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	246	250	parallel
Strand 3	A	227	232	anti-parallel
Strand 4	A	217	223	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	76	first strand
Strand 2	A	82	84	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	166	first strand
Strand 2	A	169	173	anti-parallel
Strand 3	A	97	102	anti-parallel
Strand 4	A	87	93	anti-parallel
Strand 5	F	87	93	anti-parallel
Strand 6	F	97	102	anti-parallel
Strand 7	F	169	173	anti-parallel
Strand 8	F	162	166	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	415	421	first strand
Strand 2	A	386	392	parallel
Strand 3	A	437	443	parallel
Strand 4	A	290	303	anti-parallel
Strand 5	A	505	516	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	522	first strand
Strand 2	A	539	540	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	44	first strand
Strand 2	B	246	250	parallel
Strand 3	B	227	232	anti-parallel
Strand 4	B	217	223	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	76	first strand
Strand 2	B	82	84	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	93	first strand
Strand 2	B	97	102	anti-parallel
Strand 3	B	169	173	anti-parallel
Strand 4	B	162	166	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	505	516	anti-parallel
Strand 3	B	290	303	anti-parallel
Strand 4	B	437	443	anti-parallel
Strand 5	B	386	392	parallel
Strand 6	B	415	421	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	522	first strand
Strand 2	B	539	540	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	44	first strand
Strand 2	C	246	250	parallel
Strand 3	C	227	232	anti-parallel
Strand 4	C	217	223	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	76	first strand
Strand 2	C	82	84	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	93	first strand
Strand 2	C	97	102	anti-parallel
Strand 3	C	169	173	anti-parallel
Strand 4	C	162	166	anti-parallel

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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	339	first strand
Strand 2	C	505	516	anti-parallel
Strand 3	C	290	303	anti-parallel
Strand 4	C	437	443	anti-parallel
Strand 5	C	386	392	parallel
Strand 6	C	415	421	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	521	522	first strand
Strand 2	C	539	540	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	44	first strand
Strand 2	D	246	250	parallel
Strand 3	D	227	232	anti-parallel
Strand 4	D	217	223	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	76	first strand
Strand 2	D	82	84	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	93	first strand
Strand 2	D	97	102	anti-parallel
Strand 3	D	169	173	anti-parallel
Strand 4	D	162	166	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	339	first strand
Strand 2	D	505	516	anti-parallel
Strand 3	D	290	303	anti-parallel
Strand 4	D	437	443	anti-parallel
Strand 5	D	386	392	parallel
Strand 6	D	415	421	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	521	522	first strand
Strand 2	D	539	540	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	44	first strand
Strand 2	E	246	250	parallel
Strand 3	E	227	232	anti-parallel
Strand 4	E	217	223	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	76	first strand
Strand 2	E	82	84	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	93	first strand
Strand 2	E	97	102	anti-parallel
Strand 3	E	169	173	anti-parallel
Strand 4	E	162	166	anti-parallel

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There are 6 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	338	339	first strand
Strand 2	E	505	516	anti-parallel
Strand 3	E	290	303	anti-parallel
Strand 4	E	437	443	anti-parallel
Strand 5	E	386	392	parallel
Strand 6	E	415	421	parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	521	522	first strand
Strand 2	E	539	540	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	44	first strand
Strand 2	F	246	250	parallel
Strand 3	F	227	232	anti-parallel
Strand 4	F	217	223	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	76	first strand
Strand 2	F	82	84	anti-parallel

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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	338	339	first strand
Strand 2	F	505	516	anti-parallel
Strand 3	F	290	303	anti-parallel
Strand 4	F	437	443	anti-parallel
Strand 5	F	386	392	parallel
Strand 6	F	415	421	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	521	522	first strand
Strand 2	F	539	540	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	44	first strand
Strand 2	G	246	250	parallel
Strand 3	G	227	232	anti-parallel
Strand 4	G	217	223	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	74	76	first strand
Strand 2	G	82	84	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	93	first strand
Strand 2	G	97	102	anti-parallel
Strand 3	G	169	173	anti-parallel
Strand 4	G	162	166	anti-parallel

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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	414	421	first strand
Strand 2	G	385	392	parallel
Strand 3	G	437	443	parallel
Strand 4	G	290	303	anti-parallel
Strand 5	G	505	516	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	521	522	first strand
Strand 2	G	539	540	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	40	44	first strand
Strand 2	H	246	250	parallel
Strand 3	H	227	232	anti-parallel
Strand 4	H	217	223	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	74	76	first strand
Strand 2	H	82	84	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	87	93	first strand
Strand 2	H	97	102	anti-parallel
Strand 3	H	169	173	anti-parallel
Strand 4	H	162	166	anti-parallel

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There are 6 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	338	339	first strand
Strand 2	H	505	516	anti-parallel
Strand 3	H	290	303	anti-parallel
Strand 4	H	437	443	anti-parallel
Strand 5	H	386	392	parallel
Strand 6	H	415	421	parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	521	522	first strand
Strand 2	H	539	540	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3TCF

Analysis of interatomic Contacts of Structural Units in PDB entry:
3TCF