Analysis of interatomic Contacts of Structural Units in PDB entry:
3TCV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TCV entry

There are 2 chains in PDB entry 3TCV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 4LEU 224
B
 ASP 3GLY 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3TCV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 42Right-handed alpha
Helix 2
2
A
45 51Right-handed alpha
Helix 3
3
A
60 74Right-handed alpha
Helix 4
4
A
120 137Right-handed alpha
Helix 5
5
A
151 162Right-handed alpha
Helix 6
6
A
191 204Right-handed alpha
Helix 7
7
A
205 208Right-handed 310
Helix 8
8
A
217 224Right-handed alpha
Helix 9
9
B
3 7Right-handed 310
Helix 10
10
B
29 41Right-handed alpha
Helix 11
11
B
45 50Right-handed alpha
Helix 12
12
B
60 74Right-handed alpha
Helix 13
13
B
120 137Right-handed alpha
Helix 14
14
B
151 162Right-handed alpha
Helix 15
15
B
191 204Right-handed alpha
Helix 16
16
B
205 208Right-handed 310
Helix 17
17
B
217 225Right-handed alpha
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There are 2 sheets in PDB entry 3TCV. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
23 27anti-parallel
Strand 3
A
78 84anti-parallel
Strand 4
A
90 100anti-parallel
Strand 5
A
105 113anti-parallel
Strand 6
A
142 148parallel
Strand 7
A
178 188anti-parallel
Strand 8
A
164 175anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
23 27anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
90 100anti-parallel
Strand 5
B
105 113anti-parallel
Strand 6
B
142 148parallel
Strand 7
B
178 188anti-parallel
Strand 8
B
164 175anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il