Analysis of interatomic Contacts of Structural Units in PDB entry:
3TD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TD9 entry

There is 1 chain in PDB entry 3TD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4LEU 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3TD9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 51Right-handed alpha
Helix 2
2
A
69 83Right-handed alpha
Helix 3
3
A
94 108Right-handed alpha
Helix 4
4
A
119 123Right-handed 310
Helix 5
5
A
135 150Right-handed alpha
Helix 6
6
A
164 181Right-handed alpha
Helix 7
7
A
197 207Right-handed alpha
Helix 8
8
A
217 231Right-handed alpha
Helix 9
9
A
241 245Right-handed 310
Helix 10
10
A
246 253Right-handed alpha
Helix 11
11
A
254 257Right-handed 310
Helix 12
12
A
266 270Right-handed 310
Helix 13
13
A
272 287Right-handed alpha
Helix 14
14
A
291 312Right-handed alpha
Helix 15
15
A
315 324Right-handed alpha
Helix 16
16
A
365 369Right-handed 310
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There are 3 sheets in PDB entry 3TD9. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
57 65anti-parallel
Strand 3
A
21 27parallel
Strand 4
A
88 91parallel
Strand 5
A
112 114parallel
Strand 6
A
129 131parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 190first strand
Strand 2
A
155 161parallel
Strand 3
A
211 214parallel
Strand 4
A
236 239parallel
Strand 5
A
260 263parallel
Strand 6
A
348 354anti-parallel
Strand 7
A
357 364anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
334 336anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il