Analysis of interatomic Contacts of Structural Units in PDB entry:
3TDO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TDO entry

There are 5 chains in PDB entry 3TDO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 0LYS 256
B
 ARG 0LYS 256
C
 ARG 0TYR 265
D
 ARG 0LYS 256
E
 ARG 0LYS 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 3TDO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 23Right-handed alpha
Helix 2
2
A
23 55Right-handed alpha
Helix 3
3
A
59 67Right-handed alpha
Helix 4
4
A
69 79Right-handed alpha
Helix 5
5
A
84 96Right-handed alpha
Helix 6
6
A
100 129Right-handed alpha
Helix 7
7
A
135 151Right-handed alpha
Helix 8
8
A
152 177Right-handed alpha
Helix 9
9
A
179 198Right-handed alpha
Helix 10
10
A
201 215Right-handed alpha
Helix 11
11
A
221 243Right-handed alpha
Helix 12
12
A
244 254Right-handed alpha
Helix 13
13
B
1 23Right-handed alpha
Helix 14
14
B
23 56Right-handed alpha
Helix 15
15
B
59 67Right-handed alpha
Helix 16
16
B
69 79Right-handed alpha
Helix 17
17
B
82 96Right-handed alpha
Helix 18
18
B
100 129Right-handed alpha
Helix 19
19
B
135 151Right-handed alpha
Helix 20
20
B
152 176Right-handed alpha
Helix 21
21
B
179 198Right-handed alpha
Helix 22
22
B
201 215Right-handed alpha
Helix 23
23
B
222 243Right-handed alpha
Helix 24
24
B
244 254Right-handed alpha
Helix 25
49
C
1 23Right-handed alpha
Helix 26
50
C
23 56Right-handed alpha
Helix 27
51
C
59 67Right-handed alpha
Helix 28
52
C
69 79Right-handed alpha
Helix 29
53
C
82 96Right-handed alpha
Helix 30
54
C
100 129Right-handed alpha
Helix 31
55
C
135 150Right-handed alpha
Helix 32
56
C
152 176Right-handed alpha
Helix 33
57
C
179 198Right-handed alpha
Helix 34
58
C
201 215Right-handed alpha
Helix 35
59
C
223 243Right-handed alpha
Helix 36
60
C
244 254Right-handed alpha
Helix 37
25
D
1 23Right-handed alpha
Helix 38
26
D
23 54Right-handed alpha
Helix 39
27
D
59 67Right-handed alpha
Helix 40
28
D
69 79Right-handed alpha
Helix 41
29
D
82 96Right-handed alpha
Helix 42
30
D
100 129Right-handed alpha
Helix 43
31
D
135 151Right-handed alpha
Helix 44
32
D
152 177Right-handed alpha
Helix 45
33
D
179 198Right-handed alpha
Helix 46
34
D
201 215Right-handed alpha
Helix 47
35
D
221 244Right-handed alpha
Helix 48
36
D
244 254Right-handed alpha
Helix 49
37
E
1 23Right-handed alpha
Helix 50
38
E
23 56Right-handed alpha
Helix 51
39
E
59 67Right-handed alpha
Helix 52
40
E
69 79Right-handed alpha
Helix 53
41
E
82 96Right-handed alpha
Helix 54
42
E
100 129Right-handed alpha
Helix 55
43
E
135 151Right-handed alpha
Helix 56
44
E
152 176Right-handed alpha
Helix 57
45
E
179 198Right-handed alpha
Helix 58
46
E
201 215Right-handed alpha
Helix 59
47
E
222 243Right-handed alpha
Helix 60
48
E
244 254Right-handed alpha
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There are no sheets in PDB entry 3TDO
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il