Analysis of interatomic Contacts of Structural Units in PDB entry:
3TDU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TDU entry

There are 6 chains in PDB entry 3TDU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 60ALA 252
B
 GLY 60GLY 253
C
 ASN 702ALA 776
D
 SER 701ALA 776
E
 MET 2GLU 16
F
 MET 2GLU 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 3TDU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 72Right-handed alpha
Helix 2
2
A
82 94Right-handed alpha
Helix 3
3
A
99 109Right-handed alpha
Helix 4
4
A
119 130Right-handed alpha
Helix 5
5
A
133 140Right-handed alpha
Helix 6
6
A
140 148Right-handed alpha
Helix 7
7
A
150 166Right-handed alpha
Helix 8
8
A
175 186Right-handed alpha
Helix 9
9
A
192 203Right-handed alpha
Helix 10
10
A
209 223Right-handed alpha
Helix 11
11
A
237 251Right-handed alpha
Helix 12
12
B
61 73Right-handed alpha
Helix 13
13
B
82 94Right-handed alpha
Helix 14
14
B
99 109Right-handed alpha
Helix 15
15
B
119 130Right-handed alpha
Helix 16
16
B
133 140Right-handed alpha
Helix 17
17
B
140 148Right-handed alpha
Helix 18
18
B
150 166Right-handed alpha
Helix 19
19
B
175 186Right-handed alpha
Helix 20
20
B
192 203Right-handed alpha
Helix 21
21
B
209 223Right-handed alpha
Helix 22
22
B
237 252Right-handed alpha
Helix 23
23
C
703 723Right-handed alpha
Helix 24
24
C
727 739Right-handed alpha
Helix 25
25
C
745 759Right-handed alpha
Helix 26
26
D
702 723Right-handed alpha
Helix 27
27
D
727 739Right-handed alpha
Helix 28
28
D
745 759Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3TDU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
77 81anti-parallel
Strand 3
A
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
207 208anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 81first strand
Strand 2
B
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 174first strand
Strand 2
B
207 208anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
724 726first strand
Strand 2
C
768 774anti-parallel
Strand 3
C
762 765anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
724 726first strand
Strand 2
D
768 774anti-parallel
Strand 3
D
762 765anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il