Analysis of interatomic Contacts of Structural Units in PDB entry:
3TDV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TDV entry

There are 2 chains in PDB entry 3TDV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3ALA 303
B
 GLN 3PHE 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3TDV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 16Right-handed alpha
Helix 2
2
A
49 67Right-handed alpha
Helix 3
3
A
68 70Right-handed 310
Helix 4
4
A
102 107Right-handed alpha
Helix 5
5
A
109 130Right-handed alpha
Helix 6
6
A
131 137Right-handed alpha
Helix 7
7
A
144 160Right-handed alpha
Helix 8
8
A
161 164Right-handed 310
Helix 9
9
A
165 182Right-handed alpha
Helix 10
10
A
182 187Right-handed alpha
Helix 11
11
A
198 200Right-handed 310
Helix 12
12
A
226 230Right-handed 310
Helix 13
13
A
231 239Right-handed alpha
Helix 14
14
A
239 250Right-handed alpha
Helix 15
15
A
254 280Right-handed alpha
Helix 16
16
A
288 300Right-handed alpha
Helix 17
17
B
6 16Right-handed alpha
Helix 18
18
B
49 67Right-handed alpha
Helix 19
19
B
68 70Right-handed 310
Helix 20
20
B
100 107Right-handed alpha
Helix 21
21
B
109 130Right-handed alpha
Helix 22
22
B
131 138Right-handed alpha
Helix 23
23
B
144 160Right-handed alpha
Helix 24
24
B
161 164Right-handed 310
Helix 25
25
B
165 182Right-handed alpha
Helix 26
26
B
182 187Right-handed alpha
Helix 27
27
B
198 200Right-handed 310
Helix 28
28
B
226 230Right-handed 310
Helix 29
29
B
231 239Right-handed alpha
Helix 30
30
B
239 250Right-handed alpha
Helix 31
31
B
254 280Right-handed alpha
Helix 32
32
B
282 300Right-handed alpha
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There are 6 sheets in PDB entry 3TDV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 29first strand
Strand 2
A
33 38anti-parallel
Strand 3
A
42 47anti-parallel
Strand 4
A
88 93anti-parallel
Strand 5
A
77 82anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
202 204anti-parallel
Strand 3
A
213 216anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
223 225anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 29first strand
Strand 2
B
33 38anti-parallel
Strand 3
B
42 47anti-parallel
Strand 4
B
88 93anti-parallel
Strand 5
B
77 82anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 99first strand
Strand 2
B
202 204anti-parallel
Strand 3
B
213 216anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 193first strand
Strand 2
B
223 225anti-parallel
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