Analysis of interatomic Contacts of Structural Units in PDB entry:
3TDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TDZ entry

There are 10 chains in PDB entry 3TDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 61ILE 251
C
 SER 701ALA 776
B
 SER 61ALA 252
D
 SER 701LEU 775
E
 MSE 1LEU 4
E
 SER 6LYS 8
E
 GLN 10LYS 11
F
 MSE 1LEU 4
F
 SER 6LYS 8
F
 GLN 10LYS 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3TDZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
61 72Right-handed alpha
Helix 2
2
A
82 93Right-handed alpha
Helix 3
3
A
99 109Right-handed alpha
Helix 4
4
A
119 130Right-handed alpha
Helix 5
5
A
133 148Right-handed alpha
Helix 6
6
A
150 166Right-handed alpha
Helix 7
7
A
174 186Right-handed alpha
Helix 8
8
A
192 204Right-handed alpha
Helix 9
9
A
209 223Right-handed alpha
Helix 10
10
A
237 248Right-handed alpha
Helix 11
11
A
249 251Right-handed 310
Helix 12
12
C
702 723Right-handed alpha
Helix 13
13
C
727 739Right-handed alpha
Helix 14
14
C
745 759Right-handed alpha
Helix 15
15
B
62 73Right-handed alpha
Helix 16
16
B
82 93Right-handed alpha
Helix 17
17
B
99 109Right-handed alpha
Helix 18
18
B
119 130Right-handed alpha
Helix 19
19
B
133 140Right-handed alpha
Helix 20
20
B
140 148Right-handed alpha
Helix 21
21
B
150 166Right-handed alpha
Helix 22
22
B
174 186Right-handed alpha
Helix 23
23
B
192 204Right-handed alpha
Helix 24
24
B
209 223Right-handed alpha
Helix 25
25
B
237 248Right-handed alpha
Helix 26
26
B
249 251Right-handed 310
Helix 27
27
D
702 723Right-handed alpha
Helix 28
28
D
727 739Right-handed alpha
Helix 29
29
D
745 759Right-handed alpha
Helix 30
30
E
3 11Right-handed alpha
Helix 31
31
F
3 11Right-handed alpha
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There are 4 sheets in PDB entry 3TDZ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 74first strand
Strand 2
A
77 81anti-parallel
Strand 3
A
117 118anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
724 726first strand
Strand 2
C
768 774anti-parallel
Strand 3
C
762 765anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 81first strand
Strand 2
B
117 118anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
724 726first strand
Strand 2
D
768 774anti-parallel
Strand 3
D
762 765anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il