Analysis of interatomic Contacts of Structural Units in PDB entry:
3TEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TEB entry

There are 2 chains in PDB entry 3TEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0PHE 263
B
 ALA 0PHE 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3TEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 31Right-handed alpha
Helix 2
2
A
57 67Right-handed alpha
Helix 3
3
A
150 160Right-handed alpha
Helix 4
4
A
181 190Right-handed alpha
Helix 5
5
A
196 200Right-handed alpha
Helix 6
6
B
15 31Right-handed alpha
Helix 7
7
B
57 68Right-handed alpha
Helix 8
8
B
150 161Right-handed alpha
Helix 9
9
B
181 190Right-handed alpha
Helix 10
10
B
196 200Right-handed alpha
Helix 11
11
B
218 220Right-handed 310
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There are 8 sheets in PDB entry 3TEB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 83first strand
Strand 2
A
88 96anti-parallel
Strand 3
A
34 43anti-parallel
Strand 4
A
1 7parallel
Strand 5
A
256 261anti-parallel
Strand 6
A
236 242anti-parallel
Strand 7
A
202 203parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
53 54anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
121 129anti-parallel
Strand 3
A
132 140anti-parallel
Strand 4
A
167 173parallel
Strand 5
A
226 230anti-parallel
Strand 6
A
194 195anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
222 223anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 84first strand
Strand 2
B
88 96anti-parallel
Strand 3
B
34 43anti-parallel
Strand 4
B
1 7parallel
Strand 5
B
256 262anti-parallel
Strand 6
B
235 242anti-parallel
Strand 7
B
202 203parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
53 54anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 107first strand
Strand 2
B
121 128anti-parallel
Strand 3
B
133 140anti-parallel
Strand 4
B
167 173parallel
Strand 5
B
226 230anti-parallel
Strand 6
B
194 195anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
222 223anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il