Analysis of interatomic Contacts of Structural Units in PDB entry:
3TEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TEF entry

There is 1 chain in PDB entry 3TEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 51SER 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3TEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
75 85Right-handed alpha
Helix 2
2
A
99 107Right-handed 310
Helix 3
3
A
120 127Right-handed alpha
Helix 4
4
A
136 140Right-handed 310
Helix 5
5
A
141 149Right-handed alpha
Helix 6
6
A
161 178Right-handed alpha
Helix 7
7
A
179 204Right-handed alpha
Helix 8
8
A
228 233Right-handed alpha
Helix 9
9
A
253 261Right-handed alpha
Helix 10
10
A
270 275Right-handed alpha
Helix 11
11
A
280 286Right-handed alpha
Helix 12
12
A
287 292Right-handed alpha
Helix 13
13
A
293 298Right-handed alpha
Helix 14
14
A
305 310Right-handed alpha
Helix 15
15
A
315 329Right-handed alpha
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There are 4 sheets in PDB entry 3TEF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 57first strand
Strand 2
A
60 65anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
71 74parallel
Strand 3
A
131 134parallel
Strand 4
A
151 153parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
207 214parallel
Strand 3
A
217 221anti-parallel
Strand 4
A
250 251anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
207 214parallel
Strand 3
A
264 269parallel
Strand 4
A
301 303parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il