Analysis of interatomic Contacts of Structural Units in PDB entry:
3TF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TF5 entry

There are 3 chains in PDB entry 3TF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3VAL 465
B
 PHE 2VAL 465
C
 PHE 2TYR 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 3TF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 27Right-handed alpha
Helix 2
2
A
38 46Right-handed alpha
Helix 3
3
A
56 65Right-handed alpha
Helix 4
4
A
74 82Right-handed alpha
Helix 5
5
A
106 119Right-handed alpha
Helix 6
6
A
134 146Right-handed alpha
Helix 7
7
A
166 173Right-handed alpha
Helix 8
8
A
184 199Right-handed alpha
Helix 9
9
A
203 205Right-handed 310
Helix 10
10
A
211 244Right-handed alpha
Helix 11
11
A
246 256Right-handed alpha
Helix 12
12
A
275 290Right-handed alpha
Helix 13
13
A
292 321Right-handed alpha
Helix 14
14
A
347 359Right-handed alpha
Helix 15
15
A
371 380Right-handed alpha
Helix 16
16
A
389 393Right-handed alpha
Helix 17
17
A
399 405Right-handed alpha
Helix 18
18
A
416 422Right-handed 310
Helix 19
19
A
423 431Right-handed alpha
Helix 20
20
A
447 455Right-handed alpha
Helix 21
21
B
15 27Right-handed alpha
Helix 22
22
B
38 47Right-handed alpha
Helix 23
23
B
56 63Right-handed alpha
Helix 24
24
B
74 82Right-handed alpha
Helix 25
25
B
106 119Right-handed alpha
Helix 26
26
B
134 146Right-handed alpha
Helix 27
27
B
166 173Right-handed alpha
Helix 28
28
B
184 199Right-handed alpha
Helix 29
29
B
203 205Right-handed 310
Helix 30
30
B
211 244Right-handed alpha
Helix 31
31
B
246 256Right-handed alpha
Helix 32
32
B
275 290Right-handed alpha
Helix 33
33
B
292 321Right-handed alpha
Helix 34
34
B
347 358Right-handed alpha
Helix 35
35
B
371 380Right-handed alpha
Helix 36
36
B
389 393Right-handed alpha
Helix 37
37
B
399 405Right-handed alpha
Helix 38
38
B
416 422Right-handed 310
Helix 39
39
B
423 431Right-handed alpha
Helix 40
40
B
447 455Right-handed alpha
Helix 41
41
C
16 27Right-handed alpha
Helix 42
42
C
38 46Right-handed alpha
Helix 43
43
C
56 63Right-handed alpha
Helix 44
44
C
74 81Right-handed alpha
Helix 45
45
C
106 120Right-handed alpha
Helix 46
46
C
134 146Right-handed alpha
Helix 47
47
C
166 173Right-handed alpha
Helix 48
48
C
184 199Right-handed alpha
Helix 49
49
C
203 205Right-handed 310
Helix 50
50
C
211 244Right-handed alpha
Helix 51
51
C
246 256Right-handed alpha
Helix 52
52
C
275 290Right-handed alpha
Helix 53
53
C
292 321Right-handed alpha
Helix 54
54
C
347 359Right-handed alpha
Helix 55
55
C
371 380Right-handed alpha
Helix 56
56
C
389 393Right-handed alpha
Helix 57
57
C
399 405Right-handed alpha
Helix 58
58
C
416 422Right-handed 310
Helix 59
59
C
423 431Right-handed alpha
Helix 60
60
C
447 455Right-handed alpha
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There are 9 sheets in PDB entry 3TF5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
31 35parallel
Strand 3
A
6 10parallel
Strand 4
A
84 87parallel
Strand 5
A
122 128parallel
Strand 6
A
151 157parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
207 210parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 396first strand
Strand 2
A
362 366parallel
Strand 3
A
329 333parallel
Strand 4
A
409 412parallel
Strand 5
A
436 439parallel
Strand 6
A
457 460parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
31 35parallel
Strand 3
B
6 10parallel
Strand 4
B
84 87parallel
Strand 5
B
123 128parallel
Strand 6
B
152 157parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 180first strand
Strand 2
B
207 210parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
394 396first strand
Strand 2
B
362 366parallel
Strand 3
B
329 333parallel
Strand 4
B
409 412parallel
Strand 5
B
435 439parallel
Strand 6
B
456 460parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 72first strand
Strand 2
C
31 35parallel
Strand 3
C
6 10parallel
Strand 4
C
84 87parallel
Strand 5
C
122 128parallel
Strand 6
C
151 157parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 180first strand
Strand 2
C
207 210parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
394 396first strand
Strand 2
C
362 366parallel
Strand 3
C
329 333parallel
Strand 4
C
409 412parallel
Strand 5
C
436 439parallel
Strand 6
C
457 460parallel
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