Analysis of interatomic Contacts of Structural Units in PDB entry:
3TFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TFM entry

There is 1 chain in PDB entry 3TFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 9LYS 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3TFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 59Right-handed 310
Helix 2
2
A
63 67Right-handed 310
Helix 3
3
A
97 99Right-handed 310
Helix 4
4
A
127 143Right-handed alpha
Helix 5
5
A
145 150Right-handed alpha
Helix 6
6
A
201 213Right-handed alpha
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There are 2 sheets in PDB entry 3TFM. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 167first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
26 33anti-parallel
Strand 4
A
11 17anti-parallel
Strand 5
A
193 198anti-parallel
Strand 6
A
185 190anti-parallel
Strand 7
A
171 176anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 95first strand
Strand 2
A
78 82anti-parallel
Strand 3
A
68 74anti-parallel
Strand 4
A
48 54anti-parallel
Strand 5
A
120 124anti-parallel
Strand 6
A
111 115anti-parallel
Strand 7
A
101 104anti-parallel
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