Analysis of interatomic Contacts of Structural Units in PDB entry:
3TFU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TFU entry

There are 2 chains in PDB entry 3TFU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7VAL 433
B
 GLY 7VAL 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3TFU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 21Right-handed alpha
Helix 2
2
A
61 66Right-handed alpha
Helix 3
3
A
73 87Right-handed alpha
Helix 4
4
A
97 111Right-handed alpha
Helix 5
5
A
123 142Right-handed alpha
Helix 6
6
A
161 166Right-handed alpha
Helix 7
7
A
196 211Right-handed alpha
Helix 8
8
A
234 248Right-handed alpha
Helix 9
9
A
268 273Right-handed alpha
Helix 10
10
A
282 287Right-handed 310
Helix 11
11
A
299 308Right-handed alpha
Helix 12
12
A
322 338Right-handed alpha
Helix 13
13
A
340 357Right-handed alpha
Helix 14
14
A
358 362Right-handed 310
Helix 15
15
A
384 395Right-handed alpha
Helix 16
16
A
415 433Right-handed alpha
Helix 17
17
B
9 21Right-handed alpha
Helix 18
18
B
61 66Right-handed alpha
Helix 19
19
B
73 87Right-handed alpha
Helix 20
20
B
97 111Right-handed alpha
Helix 21
21
B
123 142Right-handed alpha
Helix 22
22
B
161 166Right-handed alpha
Helix 23
23
B
196 211Right-handed alpha
Helix 24
24
B
234 248Right-handed alpha
Helix 25
25
B
267 272Right-handed 310
Helix 26
26
B
282 287Right-handed 310
Helix 27
27
B
299 308Right-handed alpha
Helix 28
28
B
322 338Right-handed alpha
Helix 29
29
B
340 357Right-handed alpha
Helix 30
30
B
358 362Right-handed 310
Helix 31
31
B
384 394Right-handed alpha
Helix 32
32
B
415 433Right-handed alpha
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There are 8 sheets in PDB entry 3TFU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 398first strand
Strand 2
A
53 59parallel
Strand 3
A
45 50anti-parallel
Strand 4
A
36 42anti-parallel
Strand 5
B
95 96parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
B
36 42parallel
Strand 3
B
45 50anti-parallel
Strand 4
B
53 59anti-parallel
Strand 5
B
397 398parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 121first strand
Strand 2
A
293 298anti-parallel
Strand 3
A
278 281anti-parallel
Strand 4
A
250 254parallel
Strand 5
A
214 219parallel
Strand 6
A
149 153parallel
Strand 7
A
186 188parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
230 231anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 370first strand
Strand 2
A
375 379anti-parallel
Strand 3
A
405 408anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 121first strand
Strand 2
B
293 298anti-parallel
Strand 3
B
278 281anti-parallel
Strand 4
B
250 254parallel
Strand 5
B
214 219parallel
Strand 6
B
149 153parallel
Strand 7
B
186 188parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 224first strand
Strand 2
B
230 231anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
365 370first strand
Strand 2
B
375 379anti-parallel
Strand 3
B
405 408anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il