Analysis of interatomic Contacts of Structural Units in PDB entry:
3TH0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TH0 entry

There is 1 chain in PDB entry 3TH0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 113LEU 666
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3TH0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
113 121Right-handed alpha
Helix 2
2
A
128 130Right-handed 310
Helix 3
3
A
132 140Right-handed alpha
Helix 4
4
A
216 223Right-handed alpha
Helix 5
5
A
235 242Right-handed alpha
Helix 6
6
A
244 249Right-handed alpha
Helix 7
7
A
250 254Right-handed 310
Helix 8
8
A
531 533Right-handed 310
Helix 9
9
A
610 613Right-handed 310
Helix 10
10
A
626 630Right-handed 310
Helix 11
11
A
642 645Right-handed 310
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There are 9 sheets in PDB entry 3TH0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 503first strand
Strand 2
A
471 478parallel
Strand 3
A
449 456parallel
Strand 4
A
427 434parallel
Strand 5
A
380 387parallel
Strand 6
A
353 355parallel
Strand 7
A
325 328parallel
Strand 8
A
296 300parallel
Strand 9
A
276 285parallel
Strand 10
A
194 196parallel
Strand 11
A
173 174parallel
Strand 12
A
150 151parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 434first strand
Strand 2
A
380 387parallel
Strand 3
A
348 350parallel
Strand 4
A
320 322parallel
Strand 5
A
291 293parallel
Strand 6
A
271 273parallel
Strand 7
A
189 191parallel
Strand 8
A
166 169parallel
Strand 9
A
143 146parallel
Strand 10
A
124 126parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 285first strand
Strand 2
A
260 265parallel
Strand 3
A
177 182parallel
Strand 4
A
157 159parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 285first strand
Strand 2
A
306 309parallel
Strand 3
A
334 337parallel
Strand 4
A
362 364parallel
Strand 5
A
394 396parallel
Strand 6
A
441 446parallel
Strand 7
A
463 468parallel
Strand 8
A
490 492parallel
Strand 9
A
516 527parallel
Strand 10
A
497 503parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
516 527first strand
Strand 2
A
535 540parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
225 226anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 369first strand
Strand 2
A
372 373anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 562first strand
Strand 2
A
574 580anti-parallel
Strand 3
A
589 597anti-parallel
Strand 4
A
600 608anti-parallel
Strand 5
A
616 617anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
635 641first strand
Strand 2
A
646 652anti-parallel
Strand 3
A
658 664anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il