Analysis of interatomic Contacts of Structural Units in PDB entry:
3TH1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TH1 entry

There are 3 chains in PDB entry 3TH1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 246
B
 MET 1ARG 246
C
 MET 1ARG 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 3TH1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 23Right-handed alpha
Helix 2
2
A
26 43Right-handed alpha
Helix 3
3
A
45 54Right-handed alpha
Helix 4
4
A
54 63Right-handed alpha
Helix 5
5
A
170 179Right-handed alpha
Helix 6
6
A
222 224Right-handed 310
Helix 7
7
B
2 23Right-handed alpha
Helix 8
8
B
26 43Right-handed alpha
Helix 9
9
B
45 66Right-handed alpha
Helix 10
10
B
170 179Right-handed alpha
Helix 11
11
B
222 224Right-handed 310
Helix 12
12
C
2 23Right-handed alpha
Helix 13
13
C
26 43Right-handed alpha
Helix 14
14
C
45 54Right-handed alpha
Helix 15
15
C
54 66Right-handed alpha
Helix 16
16
C
170 179Right-handed alpha
Helix 17
17
C
222 224Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 3TH1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 159first strand
Strand 2
A
99 108anti-parallel
Strand 3
A
236 244parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 147first strand
Strand 2
A
118 122anti-parallel
Strand 3
A
188 194anti-parallel
Strand 4
A
201 207anti-parallel
Strand 5
A
226 227parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
184 185anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 159first strand
Strand 2
B
99 104anti-parallel
Strand 3
B
236 239parallel
Strand 4
B
230 231anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 122first strand
Strand 2
B
143 147anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
184 185anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 192first strand
Strand 2
B
202 207anti-parallel
Strand 3
B
226 227parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
153 158first strand
Strand 2
C
100 108anti-parallel
Strand 3
C
237 244parallel
Back to list of sheets
Back to top of page

There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
143 147first strand
Strand 2
C
118 122anti-parallel
Strand 3
C
188 195anti-parallel
Strand 4
C
198 207anti-parallel
Strand 5
C
226 227parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 165first strand
Strand 2
C
184 185anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il