Analysis of interatomic Contacts of Structural Units in PDB entry:
3THB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3THB entry

There is 1 chain in PDB entry 3THB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 42ALA 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3THB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
87 89Right-handed 310
Helix 2
2
A
91 107Right-handed alpha
Helix 3
3
A
137 146Right-handed alpha
Helix 4
4
A
149 170Right-handed alpha
Helix 5
5
A
178 180Right-handed 310
Helix 6
6
A
219 224Right-handed alpha
Helix 7
7
A
230 247Right-handed alpha
Helix 8
8
A
255 266Right-handed alpha
Helix 9
9
A
275 286Right-handed alpha
Helix 10
10
A
298 301Right-handed 310
Helix 11
11
A
302 307Right-handed alpha
Helix 12
12
A
315 320Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 3THB. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
52 62anti-parallel
Strand 3
A
65 72anti-parallel
Strand 4
A
78 85anti-parallel
Strand 5
A
125 131anti-parallel
Strand 6
A
116 121anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
199 200anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
190 192anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il