Analysis of interatomic Contacts of Structural Units in PDB entry:
3TIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TIN entry

There is 1 chain in PDB entry 3TIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2LEU 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3TIN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
48 52Right-handed 310
Helix 3
3
A
68 73Right-handed alpha
Helix 4
4
A
73 84Right-handed alpha
Helix 5
5
A
84 89Right-handed alpha
Helix 6
6
A
128 140Right-handed alpha
Helix 7
7
A
166 171Right-handed alpha
Helix 8
8
A
264 271Right-handed alpha
Helix 9
9
A
282 297Right-handed alpha
Helix 10
10
A
298 303Right-handed alpha
Helix 11
11
A
342 348Right-handed alpha
Helix 12
12
A
348 353Right-handed alpha
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There are 4 sheets in PDB entry 3TIN. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
2 6parallel
Strand 3
A
39 41parallel
Strand 4
A
61 62parallel
Strand 5
A
310 311parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
180 184anti-parallel
Strand 3
A
147 151anti-parallel
Strand 4
A
160 161anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
220 223anti-parallel
Strand 3
A
199 202anti-parallel
Strand 4
A
313 321anti-parallel
Strand 5
A
327 333anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
220 223anti-parallel
Strand 3
A
199 202anti-parallel
Strand 4
A
313 321anti-parallel
Strand 5
A
205 207anti-parallel
Strand 6
A
213 216anti-parallel
Strand 7
A
374 376anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il