Analysis of interatomic Contacts of Structural Units in PDB entry:
3TIO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TIO entry

There are 6 chains in PDB entry 3TIO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3GLN 178
B
 ASP 3GLN 178
C
 ASP 3GLN 178
D
 ASP 3LEU 176
E
 ASP 3GLN 178
F
 ASP 3GLY 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3TIO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
154 178Right-handed alpha
Helix 2
2
B
154 177Right-handed alpha
Helix 3
3
C
154 178Right-handed alpha
Helix 4
4
D
154 175Right-handed alpha
Helix 5
5
E
154 177Right-handed alpha
Helix 6
6
F
154 179Right-handed alpha
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There are 18 sheets in PDB entry 3TIO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
26 33parallel
Strand 3
A
44 54parallel
Strand 4
A
65 67parallel
Strand 5
A
94 96parallel
Strand 6
A
111 112parallel
Strand 7
A
129 130parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 15first strand
Strand 2
A
26 33parallel
Strand 3
A
44 54parallel
Strand 4
A
81 83parallel
Strand 5
A
99 100parallel
Strand 6
A
117 118parallel
Strand 7
A
135 136parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
38 39parallel
Strand 3
A
59 60parallel
Strand 4
A
88 89parallel
Strand 5
A
104 106parallel
Strand 6
A
122 124parallel
Strand 7
A
140 143parallel
Strand 8
A
148 152anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
26 33parallel
Strand 3
B
44 54parallel
Strand 4
B
65 67parallel
Strand 5
B
94 96parallel
Strand 6
B
111 112parallel
Strand 7
B
129 130parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 15first strand
Strand 2
B
26 33parallel
Strand 3
B
44 54parallel
Strand 4
B
81 83parallel
Strand 5
B
99 100parallel
Strand 6
B
117 118parallel
Strand 7
B
135 136parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
38 39parallel
Strand 3
B
59 60parallel
Strand 4
B
88 89parallel
Strand 5
B
104 106parallel
Strand 6
B
122 124parallel
Strand 7
B
140 143parallel
Strand 8
B
148 152anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 6first strand
Strand 2
C
26 33parallel
Strand 3
C
44 54parallel
Strand 4
C
65 67parallel
Strand 5
C
94 96parallel
Strand 6
C
111 112parallel
Strand 7
C
129 130parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 15first strand
Strand 2
C
26 33parallel
Strand 3
C
44 54parallel
Strand 4
C
81 83parallel
Strand 5
C
99 100parallel
Strand 6
C
117 118parallel
Strand 7
C
135 136parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
20 21first strand
Strand 2
C
38 39parallel
Strand 3
C
59 60parallel
Strand 4
C
88 89parallel
Strand 5
C
104 106parallel
Strand 6
C
122 124parallel
Strand 7
C
140 143parallel
Strand 8
C
148 152anti-parallel
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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 6first strand
Strand 2
D
26 33parallel
Strand 3
D
44 54parallel
Strand 4
D
65 67parallel
Strand 5
D
94 96parallel
Strand 6
D
111 112parallel
Strand 7
D
129 130parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 15first strand
Strand 2
D
26 33parallel
Strand 3
D
44 54parallel
Strand 4
D
81 83parallel
Strand 5
D
99 100parallel
Strand 6
D
117 118parallel
Strand 7
D
135 136parallel
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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 21first strand
Strand 2
D
38 39parallel
Strand 3
D
59 60parallel
Strand 4
D
88 89parallel
Strand 5
D
104 106parallel
Strand 6
D
122 124parallel
Strand 7
D
140 143parallel
Strand 8
D
148 152anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 6first strand
Strand 2
E
26 33parallel
Strand 3
E
44 54parallel
Strand 4
E
65 67parallel
Strand 5
E
94 96parallel
Strand 6
E
111 112parallel
Strand 7
E
129 130parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
14 15first strand
Strand 2
E
26 33parallel
Strand 3
E
44 54parallel
Strand 4
E
81 83parallel
Strand 5
E
99 100parallel
Strand 6
E
117 118parallel
Strand 7
E
135 136parallel
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There are 8 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 21first strand
Strand 2
E
38 39parallel
Strand 3
E
59 60parallel
Strand 4
E
88 89parallel
Strand 5
E
104 106parallel
Strand 6
E
122 124parallel
Strand 7
E
140 143parallel
Strand 8
E
148 152anti-parallel
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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
5 6first strand
Strand 2
F
26 33parallel
Strand 3
F
44 54parallel
Strand 4
F
65 67parallel
Strand 5
F
94 96parallel
Strand 6
F
111 112parallel
Strand 7
F
129 130parallel
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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
14 15first strand
Strand 2
F
26 33parallel
Strand 3
F
44 54parallel
Strand 4
F
81 83parallel
Strand 5
F
99 100parallel
Strand 6
F
117 118parallel
Strand 7
F
135 136parallel
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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
20 21first strand
Strand 2
F
38 39parallel
Strand 3
F
59 60parallel
Strand 4
F
88 89parallel
Strand 5
F
104 106parallel
Strand 6
F
122 124parallel
Strand 7
F
140 143parallel
Strand 8
F
148 152anti-parallel
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