Analysis of interatomic Contacts of Structural Units in PDB entry:
3TJ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TJ0 entry

There are 2 chains in PDB entry 3TJ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 73ASP 550
B
 PRO 72THR 551
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3TJ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
74 98Right-handed alpha
Helix 2
2
A
101 106Right-handed alpha
Helix 3
3
A
107 122Right-handed alpha
Helix 4
4
A
174 187Right-handed alpha
Helix 5
5
A
189 209Right-handed alpha
Helix 6
6
A
211 218Right-handed alpha
Helix 7
7
A
224 228Right-handed 310
Helix 8
8
A
234 236Right-handed 310
Helix 9
9
A
237 242Right-handed alpha
Helix 10
10
A
246 264Right-handed alpha
Helix 11
11
A
265 268Right-handed 310
Helix 12
12
A
272 284Right-handed alpha
Helix 13
13
A
290 303Right-handed alpha
Helix 14
14
A
307 324Right-handed alpha
Helix 15
15
A
335 340Right-handed alpha
Helix 16
16
A
341 346Right-handed alpha
Helix 17
17
A
356 366Right-handed alpha
Helix 18
18
A
377 391Right-handed alpha
Helix 19
19
A
396 405Right-handed alpha
Helix 20
20
A
477 487Right-handed alpha
Helix 21
21
A
495 509Right-handed alpha
Helix 22
22
B
74 98Right-handed alpha
Helix 23
23
B
101 106Right-handed alpha
Helix 24
24
B
107 122Right-handed alpha
Helix 25
25
B
175 187Right-handed alpha
Helix 26
26
B
189 209Right-handed alpha
Helix 27
27
B
211 218Right-handed alpha
Helix 28
28
B
224 228Right-handed 310
Helix 29
29
B
234 236Right-handed 310
Helix 30
30
B
237 242Right-handed alpha
Helix 31
31
B
243 245Right-handed 310
Helix 32
32
B
246 264Right-handed alpha
Helix 33
33
B
271 284Right-handed alpha
Helix 34
34
B
290 302Right-handed alpha
Helix 35
35
B
307 321Right-handed alpha
Helix 36
36
B
335 340Right-handed alpha
Helix 37
37
B
356 366Right-handed alpha
Helix 38
38
B
377 391Right-handed alpha
Helix 39
39
B
392 395Right-handed 310
Helix 40
40
B
396 405Right-handed alpha
Helix 41
41
B
477 487Right-handed alpha
Helix 42
42
B
495 510Right-handed alpha
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There are 8 sheets in PDB entry 3TJ0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
171 172anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
165 168anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 371first strand
Strand 2
A
432 434anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 442first strand
Strand 2
A
523 524anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
173 174anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 159first strand
Strand 2
B
164 168anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 371first strand
Strand 2
B
432 434anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
441 442first strand
Strand 2
B
523 524anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il