Analysis of interatomic Contacts of Structural Units in PDB entry:
3TJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TJ4 entry

There are 2 chains in PDB entry 3TJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 372
B
 MET 1LYS 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3TJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 68Right-handed alpha
Helix 2
2
A
69 74Right-handed alpha
Helix 3
3
A
80 90Right-handed alpha
Helix 4
4
A
91 96Right-handed alpha
Helix 5
5
A
101 123Right-handed alpha
Helix 6
6
A
125 130Right-handed alpha
Helix 7
7
A
151 165Right-handed alpha
Helix 8
8
A
179 194Right-handed alpha
Helix 9
9
A
209 220Right-handed alpha
Helix 10
10
A
236 247Right-handed alpha
Helix 11
11
A
259 269Right-handed alpha
Helix 12
12
A
283 298Right-handed alpha
Helix 13
13
A
312 320Right-handed alpha
Helix 14
14
A
332 336Right-handed 310
Helix 15
15
A
360 367Right-handed alpha
Helix 16
16
B
54 68Right-handed alpha
Helix 17
17
B
69 74Right-handed alpha
Helix 18
18
B
80 90Right-handed alpha
Helix 19
19
B
91 97Right-handed alpha
Helix 20
20
B
101 123Right-handed alpha
Helix 21
21
B
125 130Right-handed alpha
Helix 22
22
B
151 165Right-handed alpha
Helix 23
23
B
179 194Right-handed alpha
Helix 24
24
B
209 220Right-handed alpha
Helix 25
25
B
236 247Right-handed alpha
Helix 26
26
B
259 269Right-handed alpha
Helix 27
27
B
283 298Right-handed alpha
Helix 28
28
B
312 320Right-handed alpha
Helix 29
29
B
332 336Right-handed 310
Helix 30
30
B
360 367Right-handed alpha
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There are 6 sheets in PDB entry 3TJ4. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 51first strand
Strand 2
A
30 39anti-parallel
Strand 3
A
3 13anti-parallel
Strand 4
A
368 369anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 328first strand
Strand 2
A
138 142parallel
Strand 3
A
346 347anti-parallel
Strand 4
A
342 343anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
199 203parallel
Strand 3
A
225 229parallel
Strand 4
A
251 253parallel
Strand 5
A
274 275parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 51first strand
Strand 2
B
30 39anti-parallel
Strand 3
B
3 13anti-parallel
Strand 4
B
368 369anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 328first strand
Strand 2
B
138 142parallel
Strand 3
B
346 347anti-parallel
Strand 4
B
342 343anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 174first strand
Strand 2
B
199 203parallel
Strand 3
B
225 229parallel
Strand 4
B
251 253parallel
Strand 5
B
274 275parallel
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