Analysis of interatomic Contacts of Structural Units in PDB entry:
3TJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TJB entry

There are 5 chains in PDB entry 3TJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 76CYS 245
B
 LEU 76GLY 242
C
 LEU 76GLY 242
D
 LEU 76CYS 245
E
 LEU 76GLY 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 3TJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
104 107Right-handed 310
Helix 2
2
A
125 140Right-handed alpha
Helix 3
3
A
152 162Right-handed alpha
Helix 4
4
A
163 167Right-handed 310
Helix 5
5
A
182 188Right-handed alpha
Helix 6
6
A
224 242Right-handed alpha
Helix 7
7
B
104 107Right-handed 310
Helix 8
8
B
125 134Right-handed alpha
Helix 9
9
B
134 140Right-handed alpha
Helix 10
10
B
152 161Right-handed alpha
Helix 11
11
B
163 167Right-handed 310
Helix 12
12
B
182 188Right-handed alpha
Helix 13
13
B
224 241Right-handed alpha
Helix 14
14
C
104 107Right-handed 310
Helix 15
15
C
125 134Right-handed alpha
Helix 16
16
C
134 140Right-handed alpha
Helix 17
17
C
152 162Right-handed alpha
Helix 18
18
C
163 167Right-handed 310
Helix 19
19
C
182 188Right-handed alpha
Helix 20
20
C
224 242Right-handed alpha
Helix 21
21
D
104 107Right-handed 310
Helix 22
22
D
125 134Right-handed alpha
Helix 23
23
D
134 140Right-handed alpha
Helix 24
24
D
152 161Right-handed alpha
Helix 25
25
D
163 167Right-handed 310
Helix 26
26
D
182 188Right-handed alpha
Helix 27
27
D
224 242Right-handed alpha
Helix 28
28
E
104 107Right-handed 310
Helix 29
29
E
125 134Right-handed alpha
Helix 30
30
E
134 140Right-handed alpha
Helix 31
31
E
152 161Right-handed alpha
Helix 32
32
E
163 167Right-handed 310
Helix 33
33
E
182 188Right-handed alpha
Helix 34
34
E
224 242Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3TJB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 102first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
176 178anti-parallel
Strand 4
A
143 149parallel
Strand 5
A
110 115parallel
Strand 6
A
200 205anti-parallel
Strand 7
A
211 217anti-parallel
Strand 8
B
211 217anti-parallel
Strand 9
B
200 205anti-parallel
Strand 10
B
110 115anti-parallel
Strand 11
B
143 149parallel
Strand 12
B
176 178parallel
Strand 13
B
89 94anti-parallel
Strand 14
B
97 102anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
197 198anti-parallel
Back to list of sheets
Back to top of page

There are 14 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 102first strand
Strand 2
C
89 94anti-parallel
Strand 3
C
176 178anti-parallel
Strand 4
C
143 149parallel
Strand 5
C
110 115parallel
Strand 6
C
200 205anti-parallel
Strand 7
C
211 217anti-parallel
Strand 8
D
211 217anti-parallel
Strand 9
D
200 205anti-parallel
Strand 10
D
110 115anti-parallel
Strand 11
D
143 149parallel
Strand 12
D
176 178parallel
Strand 13
D
89 94anti-parallel
Strand 14
D
97 102anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
97 102first strand
Strand 2
E
89 94anti-parallel
Strand 3
E
176 178anti-parallel
Strand 4
E
143 149parallel
Strand 5
E
110 115parallel
Strand 6
E
200 205anti-parallel
Strand 7
E
211 217anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il