Analysis of interatomic Contacts of Structural Units in PDB entry:
3TJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TJH entry

There are 4 chains in PDB entry 3TJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1GLY 175
B
 SER 1ILE 9
C
 ALA 0SER 203
D
 ALA 2ALA 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3TJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 53Right-handed 310
Helix 2
2
A
56 85Right-handed alpha
Helix 3
3
A
137 151Right-handed alpha
Helix 4
4
A
151 162Right-handed alpha
Helix 5
5
A
162 173Right-handed alpha
Helix 6
6
C
81 85Right-handed 310
Helix 7
7
C
185 190Right-handed alpha
Helix 8
8
D
82 86Right-handed 310
Helix 9
9
D
113 117Right-handed 310
Helix 10
10
D
128 136Right-handed alpha
Helix 11
11
D
195 199Right-handed alpha
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There are 11 sheets in PDB entry 3TJH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
3 12anti-parallel
Strand 5
A
94 103anti-parallel
Strand 6
A
109 118anti-parallel
Strand 7
A
121 126anti-parallel
Strand 8
A
133 135anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1 4first strand
Strand 2
C
23 26anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 13first strand
Strand 2
C
107 112parallel
Strand 3
C
86 94anti-parallel
Strand 4
C
30 37anti-parallel
Strand 5
C
44 49anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 13first strand
Strand 2
C
107 112parallel
Strand 3
C
86 94anti-parallel
Strand 4
C
101 103anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 20first strand
Strand 2
C
72 77anti-parallel
Strand 3
C
62 67anti-parallel
Strand 4
C
55 57anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
155 157first strand
Strand 2
C
170 179anti-parallel
Strand 3
C
134 139anti-parallel
Strand 4
C
121 127anti-parallel
Strand 5
D
121 126anti-parallel
Strand 6
D
137 147anti-parallel
Strand 7
D
185 194anti-parallel
Strand 8
D
167 169anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 165first strand
Strand 2
C
170 179anti-parallel
Strand 3
C
134 139anti-parallel
Strand 4
C
121 127anti-parallel
Strand 5
D
121 126anti-parallel
Strand 6
D
137 147anti-parallel
Strand 7
D
185 194anti-parallel
Strand 8
D
174 175anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
75 78anti-parallel
Strand 4
D
64 67anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
106 111parallel
Strand 3
D
87 96anti-parallel
Strand 4
D
31 38anti-parallel
Strand 5
D
42 49anti-parallel
Strand 6
D
56 57anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
106 111parallel
Strand 3
D
87 96anti-parallel
Strand 4
D
99 102anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
161 163first strand
Strand 2
D
152 158anti-parallel
Strand 3
D
204 211anti-parallel
Strand 4
D
230 237anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il