Analysis of interatomic Contacts of Structural Units in PDB entry:
3TJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TJM entry

There is 1 chain in PDB entry 3TJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2218SER 2500
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3TJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2218 2223Right-handed 310
Helix 2
2
A
2254 2256Right-handed 310
Helix 3
3
A
2257 2264Right-handed alpha
Helix 4
4
A
2281 2294Right-handed alpha
Helix 5
5
A
2308 2326Right-handed alpha
Helix 6
6
A
2342 2353Right-handed alpha
Helix 7
7
A
2359 2376Right-handed alpha
Helix 8
8
A
2379 2388Right-handed alpha
Helix 9
9
A
2392 2408Right-handed alpha
Helix 10
10
A
2412 2433Right-handed alpha
Helix 11
11
A
2463 2467Right-handed 310
Helix 12
12
A
2482 2485Right-handed 310
Helix 13
13
A
2486 2500Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3TJM.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2231 2233first strand
Strand 2
A
2268 2271anti-parallel
Strand 3
A
2244 2247parallel
Strand 4
A
2303 2307parallel
Strand 5
A
2333 2337parallel
Strand 6
A
2443 2447parallel
Strand 7
A
2472 2476parallel
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