Analysis of interatomic Contacts of Structural Units in PDB entry:
3TJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TJO entry

There are 3 chains in PDB entry 3TJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 160ARG 370
B
 MET 160ARG 370
D
 MET 160ARG 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3TJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
164 169Right-handed alpha
Helix 2
2
A
170 180Right-handed alpha
Helix 3
3
A
269 273Right-handed 310
Helix 4
4
A
357 369Right-handed alpha
Helix 5
5
B
164 169Right-handed alpha
Helix 6
6
B
170 180Right-handed alpha
Helix 7
7
B
269 273Right-handed 310
Helix 8
8
B
357 369Right-handed alpha
Helix 9
9
D
164 169Right-handed alpha
Helix 10
10
D
170 180Right-handed alpha
Helix 11
11
D
269 273Right-handed 310
Helix 12
12
D
357 369Right-handed alpha
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There are 6 sheets in PDB entry 3TJO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 191first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
214 218anti-parallel
Strand 4
A
251 255anti-parallel
Strand 5
A
237 246anti-parallel
Strand 6
A
227 231anti-parallel
Strand 7
A
183 191anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 286first strand
Strand 2
A
289 299anti-parallel
Strand 3
A
317 319anti-parallel
Strand 4
A
351 356anti-parallel
Strand 5
A
339 348anti-parallel
Strand 6
A
331 333anti-parallel
Strand 7
A
278 286anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 239first strand
Strand 2
B
226 231anti-parallel
Strand 3
B
183 190anti-parallel
Strand 4
B
199 208anti-parallel
Strand 5
B
214 217anti-parallel
Strand 6
B
251 255anti-parallel
Strand 7
B
241 246anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 286first strand
Strand 2
B
289 299anti-parallel
Strand 3
B
317 319anti-parallel
Strand 4
B
351 356anti-parallel
Strand 5
B
339 348anti-parallel
Strand 6
B
331 333anti-parallel
Strand 7
B
278 286anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
183 190first strand
Strand 2
D
199 208anti-parallel
Strand 3
D
214 218anti-parallel
Strand 4
D
251 255anti-parallel
Strand 5
D
237 246anti-parallel
Strand 6
D
227 231anti-parallel
Strand 7
D
183 190anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
278 286first strand
Strand 2
D
289 299anti-parallel
Strand 3
D
317 319anti-parallel
Strand 4
D
351 356anti-parallel
Strand 5
D
339 348anti-parallel
Strand 6
D
331 334anti-parallel
Strand 7
D
278 286anti-parallel
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