Analysis of interatomic Contacts of Structural Units in PDB entry:
3TJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3TJR entry

There are 2 chains in PDB entry 3TJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3HIS 280
B
 GLY 3HIS 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3TJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 33Right-handed alpha
Helix 2
2
A
43 57Right-handed alpha
Helix 3
3
A
70 86Right-handed alpha
Helix 4
4
A
102 106Right-handed 310
Helix 5
5
A
107 119Right-handed alpha
Helix 6
6
A
119 137Right-handed alpha
Helix 7
7
A
147 151Right-handed 310
Helix 8
8
A
157 179Right-handed alpha
Helix 9
9
A
196 205Right-handed alpha
Helix 10
10
A
230 245Right-handed alpha
Helix 11
11
A
254 276Right-handed alpha
Helix 12
12
B
20 33Right-handed alpha
Helix 13
13
B
43 57Right-handed alpha
Helix 14
14
B
70 86Right-handed alpha
Helix 15
15
B
102 106Right-handed 310
Helix 16
16
B
107 119Right-handed alpha
Helix 17
17
B
119 137Right-handed alpha
Helix 18
18
B
147 151Right-handed 310
Helix 19
19
B
157 179Right-handed alpha
Helix 20
20
B
198 204Right-handed alpha
Helix 21
21
B
230 245Right-handed alpha
Helix 22
22
B
254 276Right-handed alpha
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There are 3 sheets in PDB entry 3TJR. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
36 41parallel
Strand 3
A
12 16parallel
Strand 4
A
90 93parallel
Strand 5
A
140 145parallel
Strand 6
A
183 188parallel
Strand 7
A
248 249parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 65first strand
Strand 2
B
36 41parallel
Strand 3
B
12 16parallel
Strand 4
B
90 93parallel
Strand 5
B
140 145parallel
Strand 6
B
183 188parallel
Strand 7
B
248 249parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
224 225anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il